Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq7322 136 4e-30 seq3237 104 2e-20 seq12 93.3 4e-17 seq9 91.5 2e-16 >seq7322 Length=3513 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 2429 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 2488 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | |||| ||||| ||| || | |||| || ||||||| Sbjct 2489 GGGATAACATCACAGGATTT-CGGTCCTATTCTGTTGGCCTTCAGGATCGGA-GTAATGA 2546 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 2547 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2606 Query 190 T 190 | Sbjct 2607 T 2607 >seq3237 Length=36711 Score = 104 bits (114), Expect = 2e-20 Identities = 133/180 (74%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||||||| | | ||||||||| || || |||||| | Sbjct 13410 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCAGTGTTAGCCTGAATACTGTGT 13469 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | | | ||| Sbjct 13470 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTGGAATTTGAGGTA 13528 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||| || |||||| | ||||| | |||||||| |||| |||| Sbjct 13529 ATGATTAATAGGGACAGGCGGGGGCATTCGTATTGCGACATTAAAGGTGATATTCGTGGA 13588 >seq12 Length=46368093 Score = 93.3 bits (102), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||||||| | | ||||||||| || || ||| || | Sbjct 24067426 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCAGTGTTAGCCTGAAWACTGTGT 24067485 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-T 124 ||||||||||| ||||| || | |||| |||||||| ||||| ||||| | | Sbjct 24067486 GCATGGAATAATGGAATATKACCTT-GGTTATATTTTGTTGGTTT-TAGGAATTTGAGGT 24067543 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| ||| || |||||| | ||||| || | |||||||||||||| Sbjct 24067544 AATGATTAATAGGGACAGACGGGGGCATWCGTATTGCGACGTTAGWGGTGAAATTCTTGG 24067603 Query 185 AT 186 || Sbjct 24067604 AT 24067605 >seq9 Length=22721933 Score = 91.5 bits (100), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| |||||| || | | ||||||||| || || |||||| | Sbjct 9555684 ACGTTTACTTTGAACAAATTACAGTGCTTAAAGCAGGCAGTGTTAGCCTGAATACTGTGT 9555743 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | || ||||||||||| | ||| | | ||| Sbjct 9555744 GCATGGAATAATGGAATAGGACCT-CGATTCTATTTTGTTGTTTTTCGGAATTTGAGGTA 9555802 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| | |||| |||| || ||||| || | |||||||||||||||| Sbjct 9555803 ATGATTAATAGGRATAGGTGGGGCATTC-GTATTGCGACGTTAGAGGTGAAATTCTTGGA 9555861 Query 186 T 186 | Sbjct 9555862 T 9555862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511936829440