Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7322 309 6e-82 seq1383 192 1e-46 seq532 185 2e-44 seq5176 138 2e-30 seq12 118 2e-24 >seq7322 Length=3513 Score = 309 bits (342), Expect = 6e-82 Identities = 229/264 (87%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 3060 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 3118 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 3119 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 3178 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 3179 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 3237 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 3238 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 3297 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 3298 TTGACTACGTCCCTGCCCTTTGTA 3321 >seq1383 Length=91128 Score = 192 bits (212), Expect = 1e-46 Identities = 200/258 (78%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 42904 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 42961 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||||||||| || ||||||||| || || || || | Sbjct 42962 ATGCCCTTAGATGTTCTGGGCCGCACGTGCACTACACTGAAGGAATCAGCGCGTCCT--- 43018 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || ||| | | | |||||| |||| || | ||||| ||||| | | ||| Sbjct 43019 CCCTGTCCGAACCGACCGGGTAACACATTTAACGTCCTTTGTGCTAGGGATTGGGGCTTG 43078 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| | | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 43079 CAATTGATCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 43138 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 43139 ATGTCCCTGCCCTTTGTA 43156 >seq532 Length=192510 Score = 185 bits (204), Expect = 2e-44 Identities = 198/258 (77%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| |||| || ||||| || | ||||| ||||||||||||||| Sbjct 107211 CTTCTTAGAGGGATAGGCGGCGTCTAGCCGCACGA-GATTGAG-MAATAACAGGTCTGTG 107268 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||| ||||||||||||||| |||| |||||||||||| || || || || | Sbjct 107269 ATGCCCATAGATGTTCTGGGCCACACGTGCGCTACACTGAAGGAATCAGCGTGTCCT--- 107325 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || ||| | || | ||||| || | || ||| ||||||| ||||| | | ||| Sbjct 107326 CCCTGTCCGAACGGACCTGGTAACCTGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 107385 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || || |||||| ||||| ||| |||||||||| Sbjct 107386 CAATTGTTCCCCATGAACGAGGAATTCCCAGCAAGCGCAAGTCATAAGCTCGCGTTGATT 107445 Query 311 ACGTCCCTGCCCTTTGTA 328 |||| |||||| |||||| Sbjct 107446 ACGTTCCTGCCATTTGTA 107463 >seq5176 Length=13017 Score = 138 bits (152), Expect = 2e-30 Identities = 155/203 (76%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| ||| ||||| |||||||||||||||| Sbjct 10943 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCAC-AAGATTGAG-CAATAACAGGTCTGTG 11000 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||| |||||||||||||||||||||||||||||||||||| || || || || | Sbjct 11001 ATGGCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT---CCT 11057 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || ||| | || | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 11058 CCCTGTCCGAACGGACCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 11117 Query 251 CAATTATTGCTCTTCAACGAGGA 273 ||||| || | | | ||| |||| Sbjct 11118 CAATTGTTCCCCATTAACAAGGA 11140 >seq12 Length=46368093 Score = 118 bits (130), Expect = 2e-24 Identities = 131/171 (77%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 || ||||||||||| ||||| | ||||| || | ||||| ||||| |||||||||| Sbjct 24068428 CTYCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAGCAGGTCTGTG 24068485 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||||||||||||||||||||||||||||||| || || || || | Sbjct 24068486 ATTCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT---CCT 24068542 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || || ||| | || | |||||| | | || ||| ||||||| ||||| Sbjct 24068543 CCCTGTCCGAACGGACCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGAT 24068593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947079364608