Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq180273 75.2 2e-11 seq9453 75.2 2e-11 >seq180273 Length=2806 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 10/139 (7%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-----TTTGCTCGAATA 121 ||| || ||||| |||| |||||||||||| |||||||||| | ||| |||| Sbjct 692 CAGTACAATTACTATGAACCAATTAGAGTGTTTAAAGCAGGCCCCATTTATGCCTAAATA 751 Query 122 -CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT--GTTGGTTTCTAGGAC 178 | | || |||||||||||| ||||| | |||||||||| ||||||| ||| | Sbjct 752 TTCTCTGGATAGAATAATAGAATGAGACGT-CTGTTCTATTTTCAATTGGTTTTTAGATC 810 Query 179 -CGCCGTAATGATTAATAG 196 | ||||||||||||||| Sbjct 811 AAGACGTAATGATTAATAG 829 >seq9453 Length=31705 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 228 AGAGGTGAAATTCTTGGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 ||||||||||||| ||| | || | ||||||||| | ||||||| || |||| ||| Sbjct 3878 AGAGGTGAAATTCGTGG-TCCATCGTAAGACTAACAAAAGCGAAAGTATTAGCCAAAGAT 3936 Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||| ||||||||||| || || Sbjct 3937 GTTTTTATTAATCA-TGAACGAAAGTGAGAGG 3967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913489820672