Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq41432 87.8 7e-15 seq16228 86.0 3e-14 >seq41432 Length=8253 Score = 87.8 bits (96), Expect = 7e-15 Identities = 99/133 (74%), Gaps = 5/133 (4%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||| | || |||||||||||| ||||||||| ||| | | || |||| |||| | Sbjct 7376 AGCATATATACTGTGACCCGAAAGATTGTGAACTATACCTTATCAAGGCGAAGTCAGACG 7435 Query 616 AAA-----CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 | | | ||| | |||| ||| ||| ||||| ||||||||||||| |||| | ||| Sbjct 7436 ATATCCCACCCTGATAGAGGATCGTAGCAGTTCTTACGTGCAAATCGATAGTCAGAATTG 7495 Query 671 GGTATAGGGGCGA 683 | |||| || ||| Sbjct 7496 GATATAAGGACGA 7508 >seq16228 Length=14440 Score = 86.0 bits (94), Expect = 3e-14 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGA 134 |||||| | | ||||| |||||||| | ||| ||||||||||||| | ||||| |||| Sbjct 9479 GGTAAACTCCATCTAAGACTAAATAT-GACCACGAGACCGATAGCGAATAAGTACCGTGA 9537 Query 135 TCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 ||||| |||||| ||| || | ||||||||||| || |||||||| Sbjct 9538 GGGAAAGTTGAAAA-AACTCTGAATAGAGAGTTAAACAGTACGTGAAA 9584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075991767200