Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq47091 82.4 1e-13 seq17079 77.0 6e-12 seq63670 75.2 2e-11 >seq47091 Length=2776 Score = 82.4 bits (90), Expect = 1e-13 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 1502 AGATTGAG-CAATAACAGATCTGTGATGCCCTTAGATGTCATGGGCTGCACGCGCGCTAC 1560 Query 166 ACTGA 170 | ||| Sbjct 1561 AATGA 1565 >seq17079 Length=4736 Score = 77.0 bits (84), Expect = 6e-12 Identities = 52/57 (91%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 || ||||| ||||||||||||||||||||| |||||||| |||||| |||||||||| Sbjct 1933 AGATTGAG-CAATAACAGGTCTGTGATGCCTTTAGATGTCCTGGGCTGCACGCGCGC 1878 >seq63670 Length=5285 Score = 75.2 bits (82), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||| |||||||||||||||||||||||||| | |||||| | |||| ||||||| | | Sbjct 2029 AGGCCATAACAGGTCTGTGATGCCCTTAGATTTCCTGGGCTGTACGCACGCTACAATAAA 2088 Query 172 AGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 || ||| | || || | | || | ||| || || | || | | ||| Sbjct 2089 AGTATCAA-TATGTCTTCCTATAGTTTAAAAAGATAGGGCAAACTGCTAAACCACCTTCG 2147 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || | ||||| | | | || || | || | | ||| ||||| | || ||| | | | Sbjct 2148 TGGTTGGGATTGTGGACTGAAACTGTT-CAAATAAACCTGGAATTGCCAGCAAGTGTGGG 2206 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| || ||||||||| |||| ||||||||| Sbjct 2207 TCATAAGCTGGCATTGATTACG-CCCTACCCTTTGTA 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945430024192