Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq37747 194 5e-47 seq122184 120 9e-25 seq158003 107 6e-21 seq24461 105 2e-20 seq20481 104 7e-20 seq1576 82.4 2e-13 seq165292 78.8 3e-12 seq140129 78.8 3e-12 >seq37747 Length=5013 Score = 194 bits (214), Expect = 5e-47 Identities = 186/236 (79%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA--GAGCCCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||| | || | ||| ||||||| ||||| | |||||||| Sbjct 4699 GTACTCATTCCAATTACAGGGCCTCGGATTGAGTCCTGTATTGTTATTTTTCGTCACTAC 4758 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||| Sbjct 4759 CTCCCCGTGCTGGGATTGGGTAATTTACGCGCCTGCTGCCTTTCTTAGATGTGGTAGTAA 4818 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||| || |||||||| || || ||||| ||||||| |||| |||| || Sbjct 4819 TTTCTCAGGCTCCTTCCCCGGAATCAAATCCCAATTCTTCGTTACCTGTTGCAACCAAGG 4878 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAG-------GGCAGAAATTTGAATGA 227 ||| | ||| |||||| | ||||||||| |||||||||||||| || Sbjct 4879 TAGTC--CTA-GATACCATTAATAGTTGATAGCGAGAAAGGCAGAAATTTGAAAGA 4931 >seq122184 Length=1491 Score = 120 bits (132), Expect = 9e-25 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| || ||||||||||| |||| ||||| ||||| | |||||| || |||| Sbjct 1406 CCCTGTGTTGGATTTGGGTAATTTACGCGAATGCTGGCTTCCGTAGATGTGTTATTCGTT 1347 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||| |||| |||||||||||||||||| | | ||| | | | | ||||| Sbjct 1346 TCTCAGGCTTACTCTTTGGAATCGAACCCTAATTCTTCATAACCACTAGTAAGCGTGGTA 1287 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 || | || ||||| | | | ||||||||||||| |||| || || | | || || Sbjct 1286 CCCCTCGATACTACCGTAAATATTTGATAGGGCAGATATTTAAAAGACCTTTTGCTGGTA 1227 Query 241 CAAGGCCATGCGAT 254 | | ||||||||| Sbjct 1226 CTTGACCATGCGAT 1213 >seq158003 Length=1605 Score = 107 bits (118), Expect = 6e-21 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || ||||||| ||||| | || || ||||| ||| |||||||||||| | || Sbjct 239 AGTCCTGTATTTTTATTTTTCGTTTATATCTCCCTGTGCTAGGATTGGGTAATATCTACG 180 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 || |||||||||| |||||||||| | ||||||| | |||||| | |||| |||| Sbjct 179 GCTCTTGCCTTCCTTAGATGTGGTAGTCATTTCTCATTATTCCTCTCTGCAATCCGACCC 120 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 ||||||||| | || ||| || | |||| || || |||| || | || ||| | Sbjct 119 AGATTCCCCGTAAACCCTTGCAACATTAGTAGTCCTAGATACTACGATTTATAGCTGAAA 60 Query 210 GGGCAGAAATTTGAATGAACCATCGCC 236 ||||| | ||||||| || | ||| || Sbjct 59 GGGCAAATATTTGAAAGATCTATCTCC 33 >seq24461 Length=4740 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 ||| | | |||| | |||||||| |||||||||| ||||||||||||| || ||||| || Sbjct 2888 TTTACACACCTGGTACCTTCCTTAGATGTGGTAGTCGTTTCTCAGGCTGCCCCTCCGAAA 2829 Query 142 TCGAACCCTAATTCCCCGTTACCCGTTG 169 ||||||||| ||||||| |||||||||| Sbjct 2828 TCGAACCCTGATTCCCCATTACCCGTTG 2801 >seq20481 Length=6748 Score = 104 bits (114), Expect = 7e-20 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 4 CTCATTCCAATTACA-AGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| ||||||| || | | | ||| ||||||| ||||| | ||||||||||| Sbjct 1062 CTCATTCGAATTACAGAGCCTCGGATTGAGTCCTGTATTGCTATTTTTCGTCACTACCTC 1121 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||||| ||||||| ||||||| | |||||||||||||| |||| || |||||||| Sbjct 1122 CCCGTACTGGGATTGAGTAATTTACTCGCCTGCTGCCTTCTAAGGAT-TGAAAGCCGTTT 1180 Query 122 CTCAGGCTCCCTCTCCGGAAT 142 ||||| | || |||||||| Sbjct 1181 TTCAGGTTACCCTTCCGGAAT 1201 >seq1576 Length=1563 Score = 82.4 bits (90), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 ||| ||||||| || ||| || |||||| | |||| ||||||||||||||| | Sbjct 1475 GAGTCCTGTATT-GTTTTTTTTCGCACTACACCGTCGTGCTGGGATTGGGTAATTTAAAC 1533 Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||| ||||||||||||| Sbjct 1534 GCCTGCTGCCTTCCTTAGATGTGGTAGCCG 1563 >seq165292 Length=2398 Score = 78.8 bits (86), Expect = 3e-12 Identities = 108/146 (74%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA--CTATCAAATAAACGAT 406 |||| ||||||||||| |||| || ||| || || | ||| | ||| |||||| || Sbjct 1870 TATTTGCTCTAGAATTGCCACAGT-ATCTTTGAAGCTATGTATACGATCTAATAAATTAT 1812 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 || ||| ||||||| || || ||||||| | | || | | ||| | ||||| | Sbjct 1811 AATTGAAATAATGAGATTTT-GCGTTTTCACTAT-TCGAAAGTGTGTACCTTAACATGTA 1754 Query 467 TGGCTTAATCTTTGAGACAAGCATAT 492 |||| ||||||||||||||||||||| Sbjct 1753 TGGCCTAATCTTTGAGACAAGCATAT 1728 >seq140129 Length=1557 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/92 (79%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGAC--CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||| || | | ||| |||| || ||||| |||||||||| Sbjct 870 GTACTCATTCCAATTACAGGATTTCGGATTGAGTCCTGCATTGTTATTTTTTGTCACTAC 811 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGC 90 || ||| ||| || |||||||||||| ||||| Sbjct 810 CTTCCCATGTTGGTATTGGGTAATTTACGCGC 779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507577606144