Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01]
186,864 sequences; 541,697,276 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq37747 194 5e-47
seq122184 120 9e-25
seq158003 107 6e-21
seq24461 105 2e-20
seq20481 104 7e-20
seq1576 82.4 2e-13
seq165292 78.8 3e-12
seq140129 78.8 3e-12
>seq37747
Length=5013
Score = 194 bits (214), Expect = 5e-47
Identities = 186/236 (79%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAA--GAGCCCTGTATCAGTATTTATTGTCACTAC 58
|||||||||||||||||| | || | ||| ||||||| ||||| | ||||||||
Sbjct 4699 GTACTCATTCCAATTACAGGGCCTCGGATTGAGTCCTGTATTGTTATTTTTCGTCACTAC 4758
Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118
||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 4759 CTCCCCGTGCTGGGATTGGGTAATTTACGCGCCTGCTGCCTTTCTTAGATGTGGTAGTAA 4818
Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178
||||||||||||| || |||||||| || || ||||| ||||||| |||| |||| ||
Sbjct 4819 TTTCTCAGGCTCCTTCCCCGGAATCAAATCCCAATTCTTCGTTACCTGTTGCAACCAAGG 4878
Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAG-------GGCAGAAATTTGAATGA 227
||| | ||| |||||| | ||||||||| |||||||||||||| ||
Sbjct 4879 TAGTC--CTA-GATACCATTAATAGTTGATAGCGAGAAAGGCAGAAATTTGAAAGA 4931
>seq122184
Length=1491
Score = 120 bits (132), Expect = 9e-25
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||| |||| || ||||||||||| |||| ||||| ||||| | |||||| || ||||
Sbjct 1406 CCCTGTGTTGGATTTGGGTAATTTACGCGAATGCTGGCTTCCGTAGATGTGTTATTCGTT 1347
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||| |||| |||||||||||||||||| | | ||| | | | | |||||
Sbjct 1346 TCTCAGGCTTACTCTTTGGAATCGAACCCTAATTCTTCATAACCACTAGTAAGCGTGGTA 1287
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|| | || ||||| | | | ||||||||||||| |||| || || | | || ||
Sbjct 1286 CCCCTCGATACTACCGTAAATATTTGATAGGGCAGATATTTAAAAGACCTTTTGCTGGTA 1227
Query 241 CAAGGCCATGCGAT 254
| | |||||||||
Sbjct 1226 CTTGACCATGCGAT 1213
>seq158003
Length=1605
Score = 107 bits (118), Expect = 6e-21
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89
|| ||||||| ||||| | || || ||||| ||| |||||||||||| | ||
Sbjct 239 AGTCCTGTATTTTTATTTTTCGTTTATATCTCCCTGTGCTAGGATTGGGTAATATCTACG 180
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
|| |||||||||| |||||||||| | ||||||| | |||||| | |||| ||||
Sbjct 179 GCTCTTGCCTTCCTTAGATGTGGTAGTCATTTCTCATTATTCCTCTCTGCAATCCGACCC 120
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209
||||||||| | || ||| || | |||| || || |||| || | || ||| |
Sbjct 119 AGATTCCCCGTAAACCCTTGCAACATTAGTAGTCCTAGATACTACGATTTATAGCTGAAA 60
Query 210 GGGCAGAAATTTGAATGAACCATCGCC 236
||||| | ||||||| || | ||| ||
Sbjct 59 GGGCAAATATTTGAAAGATCTATCTCC 33
>seq24461
Length=4740
Score = 105 bits (116), Expect = 2e-20
Identities = 76/88 (86%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141
||| | | |||| | |||||||| |||||||||| ||||||||||||| || ||||| ||
Sbjct 2888 TTTACACACCTGGTACCTTCCTTAGATGTGGTAGTCGTTTCTCAGGCTGCCCCTCCGAAA 2829
Query 142 TCGAACCCTAATTCCCCGTTACCCGTTG 169
||||||||| ||||||| ||||||||||
Sbjct 2828 TCGAACCCTGATTCCCCATTACCCGTTG 2801
>seq20481
Length=6748
Score = 104 bits (114), Expect = 7e-20
Identities = 110/141 (78%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 4 CTCATTCCAATTACA-AGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
||||||| ||||||| || | | | ||| ||||||| ||||| | |||||||||||
Sbjct 1062 CTCATTCGAATTACAGAGCCTCGGATTGAGTCCTGTATTGCTATTTTTCGTCACTACCTC 1121
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||||| ||||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct 1122 CCCGTACTGGGATTGAGTAATTTACTCGCCTGCTGCCTTCTAAGGAT-TGAAAGCCGTTT 1180
Query 122 CTCAGGCTCCCTCTCCGGAAT 142
||||| | || ||||||||
Sbjct 1181 TTCAGGTTACCCTTCCGGAAT 1201
>seq1576
Length=1563
Score = 82.4 bits (90), Expect = 2e-13
Identities = 73/90 (81%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88
||| ||||||| || ||| || |||||| | |||| ||||||||||||||| |
Sbjct 1475 GAGTCCTGTATT-GTTTTTTTTCGCACTACACCGTCGTGCTGGGATTGGGTAATTTAAAC 1533
Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118
|||||||||||||||| |||||||||||||
Sbjct 1534 GCCTGCTGCCTTCCTTAGATGTGGTAGCCG 1563
>seq165292
Length=2398
Score = 78.8 bits (86), Expect = 3e-12
Identities = 108/146 (74%), Gaps = 5/146 (3%)
Strand=Plus/Minus
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA--CTATCAAATAAACGAT 406
|||| ||||||||||| |||| || ||| || || | ||| | ||| |||||| ||
Sbjct 1870 TATTTGCTCTAGAATTGCCACAGT-ATCTTTGAAGCTATGTATACGATCTAATAAATTAT 1812
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
|| ||| ||||||| || || ||||||| | | || | | ||| | ||||| |
Sbjct 1811 AATTGAAATAATGAGATTTT-GCGTTTTCACTAT-TCGAAAGTGTGTACCTTAACATGTA 1754
Query 467 TGGCTTAATCTTTGAGACAAGCATAT 492
|||| |||||||||||||||||||||
Sbjct 1753 TGGCCTAATCTTTGAGACAAGCATAT 1728
>seq140129
Length=1557
Score = 78.8 bits (86), Expect = 3e-12
Identities = 73/92 (79%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGAC--CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58
|||||||||||||||||| || | | ||| |||| || ||||| ||||||||||
Sbjct 870 GTACTCATTCCAATTACAGGATTTCGGATTGAGTCCTGCATTGTTATTTTTTGTCACTAC 811
Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGC 90
|| ||| ||| || |||||||||||| |||||
Sbjct 810 CTTCCCATGTTGGTATTGGGTAATTTACGCGC 779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507577606144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |