Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tipula_20oleracea_20[genbank_20GCA_5F001017535.1_202015-06-01] 186,864 sequences; 541,697,276 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq115302 232 5e-56 seq146712 192 5e-44 >seq115302 Length=2783 Score = 232 bits (256), Expect = 5e-56 Identities = 374/534 (70%), Gaps = 4/534 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||||||||| || || ||||| | || || || || | || ||||||||| ||| | Sbjct 2299 AGGCGGAAGCATCATTTTGGACAGCTGAAGAAGTTGACCTATCAAAAGACATGGCTGATT 2240 Query 61166 GGGA-GCGTTTATCGAGCGG-TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223 |||| || | | | || ||||| || || ||| || || | || || || || Sbjct 2239 GGGATGCACTAAA--ACCGTCTGAACGTCACTTTATTTCGCACGTACTTGCATTTTTCGC 2182 Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283 || || || ||||| || || || |||||| | ||||||||| || || || ||| | Sbjct 2181 AGCATCTGATGGTATTGTAAACGAAAATTTAGTTGAACGTTTCAGCCAAGAAGTTCAAAT 2122 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343 | || || |||||||||||||| || || ||||||||||| ||||| || || ||||| Sbjct 2121 AACCGAAGCACGTTGTTTCTACGGGTTTCAAATTGCCATGGAAAATGTTCATTCCGAGAT 2062 Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAA 61403 ||||||| |||| || |||||||| ||| | || | || ||||| || ||||| Sbjct 2061 GTACAGTCTTCTAATTGATACGTATATCCGAGATCCAAAAGAGCGTGACTTTTTATTCAA 2002 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC 61463 |||| | || || |||| || || |||||| || |||||| | | ||||| | Sbjct 2001 TGCCGTTGAAACTTTACCATGTGTAAAAAAGAAAGCTGACTGGGCCCTACAATGGATTTC 1942 Query 61464 CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 || | | |||| | ||||||||||| | | ||||| || | ||| || || | || Sbjct 1941 AAGCAAATCGGCGAATTTTGGTGAACGTATTATTGCATTCGCAGCGGTGGAAGGAATTTT 1882 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 || ||||| || || | || ||||||||||| |||||||| || ||||| ||| | Sbjct 1881 CTTTAGTGGGAGTTTCGCATCCATATTTTGGTTGAAAAAACGTGGCCTCATGCCAGGTTT 1822 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||| || || || | |||||| | ||||| || | || ||||||||||| Sbjct 1821 GACATTTTCGAACGAACTAATATCAAGAGACGAAGGATTACACTGTGATTTTGC 1768 >seq146712 Length=6971 Score = 192 bits (212), Expect = 5e-44 Identities = 583/894 (65%), Gaps = 20/894 (2%) Strand=Plus/Plus Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || || ||||||||||| | | || | | ||||||| || || || || | |||| Sbjct 3069 TATATTGTCTCGAAAATTTGCTGGTTTAATAATTGTGCCTCTTCACTTTCATATG-CATA 3127 Query 65795 CC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||| | | || | || |||| |||||| || ||||| || || || ||||| | Sbjct 3128 ACGCATTAATATGAATGCATCAGCCATACCTTGTACACCAATCCCAATTGGTCGATGTCT 3187 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || |||||||||| | || ||||| | || |||||||| | ||| || || ||| || Sbjct 3188 CATATTGGAACGTTTTGCTTCAGGGATTGGATAGTAATTAACATCAATTATTTTATTTAA 3247 Query 65914 ATTGCGTGTCACCACATGCACGATACGTCG--CAA-TTGTTCGAAATCAAAATGTTTAGG 65970 ||| |||||| | | | || || ||| ||||| ||||| | | ||| Sbjct 3248 ATTTTTTGTCACAATTTTA--GTAACTTCTTTCAACTTGTTA-AAATCGTATTTTTTTTC 3304 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 | | | | | |||||| | ||||| | || || | || || || Sbjct 3305 ATTAAC---ATTT---------ACAAACATATTGAGGGCGATTGACGCTAAATTACAAAC 3352 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 |||| || || | | | | || ||||||||||| |||| ||| || || Sbjct 3353 GGCTACTTCATCTTTTGACGAAAATTCTACAATTTCGGTACACAAATTGGAACATTTAAT 3412 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 ||| || | ||| |||||||| || ||||| || ||||| || |||| ||| ||||| Sbjct 3413 GGTACCGATATTTTGTTGATTGGATTTTCGATTACAAGCATCTTTATACAGCATATACGG 3472 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 | || || |||||||| ||||| || || | ||| |||| | || ||||| | Sbjct 3473 AACTCCAGTTTCAACTTGACTTTCAATAATAGCATACCATAGAGATTGGGCTTTCACTTT 3532 Query 66211 ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 |||| | |||| || ||| || | || || || | ||| || || ||||| Sbjct 3533 GCGTAGAAAACGGCCTTCGCTTTCATATTTCTCATATAGTTTTTCAAATTCATCTCCCCA 3592 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 ||| |||| ||||| | ||| |||||||| | |||||||| ||| ||| Sbjct 3593 ACAATCGTGAAGACCAGGACATTCGTGAGGACACATTAAAGACCAATCTTCATTTGCTTC 3652 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 || || |||||||| || |||||||| || || || || | ||| || || | Sbjct 3653 AACGCGCTTCATAAATAAGTCGGGTATCCATAGTGCATAAAACATATCTCGGGCCCTAAC 3712 Query 66391 CTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 ||||| | || |||||| || || || || ||||| || || ||||||| || Sbjct 3713 TTCCTCTTTACCTGTATTTTTCTTTAAATCAAGAAATTCAAAAATATCACCATGCCAAGG 3772 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 ||| || || ||||| || | ||| ||||||| |||||||| || ||||| ||||| Sbjct 3773 TTCTAGATAAATGGCAAATGCGCCGGGACGTTTGTTACCACCTTGATCAACGTACCGAGC 3832 Query 66511 GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTC 66570 ||| ||| | || | |||| ||||| ||||| ||||| | ||||| || || | Sbjct 3833 AGTATTATTGTACACTCTTAACAAAGGTACAAGCCCATTAGAAATACCATTTGTACCCGC 3892 Query 66571 GATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 || ||||| ||| || ||| |||||||| || || ||||| || || Sbjct 3893 AATATATGATCCCTTTGCTCGAATACAATGAACATTAAGGCCTATACCTCCTGC 3946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396662576648960