Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20cornetzi_20[refseq_20GCF_5F001594075.1_202016-03-25] 19,761 sequences; 369,438,293 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq19151 246 6e-63 seq16224 165 1e-38 seq16010 165 1e-38 seq17022 98.7 2e-18 >seq19151 Length=596 Score = 246 bits (272), Expect = 6e-63 Identities = 188/220 (85%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCT 158 ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 596 AAAGCAGGCCTATGCCTGAATACATTAGCATGGAATAATAGAATAGGACGATGCGGTTCT 537 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||| ||||||||||||||||||||| ||| ||||| | |||| Sbjct 536 ATTTTGTTGGTTTCTAGAGTCGCCGTAATGATTAATAGGGACAGTTGGGGGCATTGGTAT 477 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | | | | |||||||||||||||||||| | | ||||| |||| ||||||||| || Sbjct 476 TGAGTCGCTAGAGGTGAAATTCTTGGATTGACTCAAGACCGACTATTGCGAAAGCATTTG 417 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||| |||| | ||||| |||||||| Sbjct 416 CCAAGGATGTTTTCATTGATCA-AGGACGAAGGTTAGGGG 378 >seq16224 Length=27884 Score = 165 bits (182), Expect = 1e-38 Identities = 197/261 (75%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATA 121 ||| | || ||||||||| | ||||||||||| | ||||||||| | | || ||||| Sbjct 8092 GCCGGTACGTTTACTTTGTACAAATTAGAGTGCTTAAAGCAGGCTATCCTCGCCTGAATA 8033 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | |||||||| ||| |||||||| | |||||||||||||||||||| | ||| | Sbjct 8032 CTGCGTGCATGGAACAATGGAATAGGAACT-CGGTTCTATTTTGTTGGTTT-TCGGAACC 7975 Query 181 CCG---TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||| |||||||||||||||| || ||||| | ||||| || |||||||||| Sbjct 7974 CCGAGGTAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAA 7915 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 ||||||||| ||||| || |||||||| || |||| ||||||||||||| Sbjct 7914 TTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAGCATTTGCCAAAAATGTTTTCATTAA 7855 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 7854 TCA-AGAACGAAAGTTAGAGG 7835 >seq16010 Length=70657 Score = 165 bits (182), Expect = 1e-38 Identities = 209/282 (74%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| ||||| | | ||| | || ||||||||||| ||||||||||| | Sbjct 22136 TGCTCTTTACTGAGTGTGGAGTCGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 22077 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| | | || |||||| |||||||||||| ||||||||| | |||| Sbjct 22076 AAAGCAGGCAATCCTCGCCTGAATACTGCGTGCATGGAATAATGGAATAGGACCT-CGGT 22018 Query 156 TCTATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||| | ||| | ||||||||||||||||| || |||| | Sbjct 22017 TCTATTTTGTTGGTTTTCGGAACCCTGAGGTAATGATTAATAGGGACAGATAGGGGCATT 21958 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || |||||| ||| | |||||| ||||| | |||||||| Sbjct 21957 CGTATTGCGACGTTAGAGGTAAAAATTTTGGATCGTCGCAAGACGGATAGAAGCGAAAGC 21898 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||||| |||||||||||||||| ||||||||||||| Sbjct 21897 ATTTACCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAG 21857 >seq17022 Length=10828 Score = 98.7 bits (108), Expect = 2e-18 Identities = 117/152 (77%), Gaps = 10/152 (7%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATA 121 ||| | || ||||||||||| ||||||||||| | ||||||||| | || ||||| Sbjct 10813 GCCGGTACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATAATCGCCTGAATA 10754 Query 122 C-ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--- 177 | |||||||||||| ||||| || | |||||||||||||||||||| | ||| Sbjct 10753 CTGCGTGCATGGAATAATGCAATAGCACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACC 10696 Query 178 CCGCCGTAATG-ATTAATAGGGATAGTCGGGG 208 ||| |||||| ||||||||||| || |||| Sbjct 10695 CCGAGGTAATGAATTAATAGGGACAGATGGGG 10664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915019147328