Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20cornetzi_20[refseq_20GCF_5F001594075.1_202016-03-25] 19,761 sequences; 369,438,293 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq19723 223 7e-56 seq16224 201 2e-49 seq16010 201 2e-49 >seq19723 Length=60925 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 29949 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 30006 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 30007 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 30063 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 30064 CCCTGGCCGAAAGGCCCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 30123 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| || |||||||||| Sbjct 30124 CAATTGTTTCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATACGCTCGCGTTGATT 30183 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 30184 ACGTCCCTGCCCTTTGTA 30201 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 53990 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 53933 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 53932 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 53876 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 53875 CCCTGGCCGAAAGGCCCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 53816 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| || |||||||||| Sbjct 53815 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATACGCTCGCGTTGATT 53756 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 53755 ACGTCCCTGCCCTTTGTA 53738 >seq16224 Length=27884 Score = 201 bits (222), Expect = 2e-49 Identities = 202/258 (78%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| || | ||||| |||||||||||||||| Sbjct 7401 CTTCTTAGAGGGACAGGCTGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 7344 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || || Sbjct 7343 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTTTCC 7284 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||||| |||| | ||||| | | || ||| | ||||| ||||| | | ||| Sbjct 7283 ---TGGCCGAAAGGCCCAGGTAACCCGTTGAACCTCCTTTGTGCTAGGGATTGGGGCTTG 7227 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 7226 CAACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 7167 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||| Sbjct 7166 ACGTCTTTGCCCTTTGTA 7149 >seq16010 Length=70657 Score = 201 bits (222), Expect = 2e-49 Identities = 202/258 (78%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 21420 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 21363 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||| ||||| || || || || Sbjct 21362 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTATACTGAAGGAATCAGCGTGTGTT--- 21306 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||||| | || ||| ||||||| ||||| | | ||| Sbjct 21305 CCCTGGCCGAAAGGCCCGGGTAATCCGTTGAACCTCCTTCGTGCTAGGGATTGGGACTTG 21246 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||| ||| | | |||||||| ||| ||| |||||||||| Sbjct 21245 CAATTGTTCCCCATGAACGAGCAATTCTCAATAAGCGCGAAGCATAAGCTCGCGTTGATT 21186 Query 311 ACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||| Sbjct 21185 ACGACCCTGCCCTTTGTA 21168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947012823808