Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4417 268 2e-69 seq5088 244 2e-62 >seq4417 Length=1354397 Score = 268 bits (296), Expect = 2e-69 Identities = 235/290 (81%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||| || ||||||||||||||||| ||||||||| Sbjct 1322029 TACTGAGCAGGATTACTATGGCAATGACTAGTTATCAGTAGGGTAAAACTGACCTGTCTC 1322088 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||| |||||||| || ||||||||||| || | ||||||||||||| | |||| || Sbjct 1322089 ACGACGCTCTAAACCTAGTTCACGTTCCCTGTTGGCGGGTGAACAATCCGATGCTTGGCG 1322148 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1322149 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1322208 Query 180 -------TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1322209 CGCTAAGCGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACT 1322268 Query 233 TCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| || ||| ||| | | | |||||||||||| ||| ||||| Sbjct 1322269 TCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGATAAGCCGTGCTTTC 1322316 >seq5088 Length=261818 Score = 244 bits (270), Expect = 2e-62 Identities = 204/248 (82%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 6 AGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGG------GTAAAACTAACCTGTCT 58 ||| ||||||| |||| ||| |||||||||||| ||||||||||||||||| Sbjct 106342 AGCAGAATTACTATTGCAATGACTTGTCATCAGTAGGTAGACAGTAAAACTAACCTGTCT 106283 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 ||||| ||| ||||||||||||| |||||||||| | || || ||||||| |||||| | Sbjct 106282 CATGATGGTTTAAACCCAGCTCATGTTCCCTATTGGCGGATGTACAATCCGACGCTTGGC 106223 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||| ||||||| |||| |||| ||| ||||||||||| || ||||| Sbjct 106222 GAATTCTGCTTTTCAATGATAGTAAGAACCGATATCAAAGGATCAAAA---AAGGTCGCA 106166 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| || Sbjct 106165 ATGAACGCTTGTCTGCCACAAGCCAGTTATCCCTGTGGTGACTTTTCTGACACCTCTTGC 106106 Query 239 CTCAAATT 246 ||||| Sbjct 106105 TGAAAATT 106098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854350137216