Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4406 226 9e-57 seq4085 176 1e-41 seq5088 163 9e-38 seq4417 140 1e-30 seq5696 105 2e-20 >seq4406 Length=324308 Score = 226 bits (250), Expect = 9e-57 Identities = 154/175 (88%), Gaps = 11/175 (6%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 281279 AGTAAATAGGGACAGCGGAAATCTTGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 281338 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||| | |||||||||| || Sbjct 281339 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-----------TTCCCGCGCTTGCTT 281387 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| Sbjct 281388 GAATTTCTTCACGTTGACATTCAGAGCACTGGACAGAAATCACATTGCTTTAACA 281442 >seq4085 Length=6844556 Score = 176 bits (194), Expect = 1e-41 Identities = 171/218 (78%), Gaps = 13/218 (6%) Strand=Plus/Plus Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGC----TCCCACTTATTCTACACCTCTCA 260 || ||||||||||||| || ||| | | || ||| |||||| ||||| || ||| Sbjct 254330 AGTGTAGTGGTATTTCGCTGGCG---ATATTGCCATCTCCTACTTATGCTACATCTATCA 254386 Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 || || | || | ||||||| ||||| ||| ||||||| |||||||||| ||| Sbjct 254387 TCTCTTT--ATAATACCAGACTAGAATCAAGTTCATTAGGGTCTCTTTTCCCCGCTAATT 254444 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 |||| | | |||||||||| |||||||||||| ||||||| |||| |||||||| Sbjct 254445 TTTCCAAACTCATTCCCTTGGCAGTGGTTTCGCTAAATAGTAG----GGACTGTGGGAAT 254500 Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||||||||||||||||||||||||| Sbjct 254501 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 254538 >seq5088 Length=261818 Score = 163 bits (180), Expect = 9e-38 Identities = 154/196 (79%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||||| ||||| |||| | ||| | | ||| | | |||||||| || || Sbjct 105753 CTTCCACTTATGCTACATCTCTTATGTCTTCTTACAGTGCCAGACTAGAG-----CTTAA 105699 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||| | || ||| |||||||||| |||||| || ||| ||||| Sbjct 105698 TAGGGTCTTCTTTTTTCTCTAATTTTTTCAAGCCCGTTTCCTTGGTAGTATTTTTGCTAG 105639 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 105638 ----TAGATAGGAACAGTGGGAATCTTGTTAATCCATTCATGCGCGTTACTAATTAGATA 105583 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 105582 ACGAGGCATTTGGCTA 105567 >seq4417 Length=1354397 Score = 140 bits (154), Expect = 1e-30 Identities = 158/210 (75%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||||| | || ||||||| ||||||| | |||||||||||||| || ||| Sbjct 1322580 TCCGCTCAACCGAGTAAGTAAGGAAACGATGAAAATAGTGGTATTTCAC---CGGCGATG 1322636 Query 234 CGGC----TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 || ||||| |||| |||||| | | ||| | ||| | | ||||| |||| Sbjct 1322637 TTGCCATTTCCCATTTATGCTACACTTT--ATGTCTCCTTACAGTGCCAGACTAAAGTCT 1322694 Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 |||||||||||||||||||||||| | ||| ||||||||||||||||||| |||||| Sbjct 1322695 AGCTCAACAGGGTCTTCTTTCCCCATTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTT 1322754 Query 350 TCGCTAGATAG-----TAGATAGGGACAGT 374 ||||||||||| |||||||||||||| Sbjct 1322755 TCGCTAGATAGTACAATAGATAGGGACAGT 1322784 Score = 109 bits (120), Expect = 2e-21 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| | | ||||||| ||| |||| |||||||| ||||||||||| Sbjct 1322360 CTTTTGCTCTACGCGGGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGATACCTGCGTTATT 1322419 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 1322420 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 1322479 >seq5696 Length=2073310 Score = 105 bits (116), Expect = 2e-20 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 1118680 GTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTAGGTAGAAATCA 1118739 Query 521 CATTGCGTCAA 531 |||||| |||| Sbjct 1118740 CATTGCCTCAA 1118750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635104569728