Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016-
03-25] 5,836 sequences; 291,747,019 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq4406 226 9e-57
seq4085 176 1e-41
seq5088 163 9e-38
seq4417 140 1e-30
seq5696 105 2e-20
>seq4406
Length=324308
Score = 226 bits (250), Expect = 9e-57
Identities = 154/175 (88%), Gaps = 11/175 (6%)
Strand=Plus/Plus
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
|||| |||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 281279 AGTAAATAGGGACAGCGGAAATCTTGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 281338
Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478
|||||||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 281339 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-----------TTCCCGCGCTTGCTT 281387
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 281388 GAATTTCTTCACGTTGACATTCAGAGCACTGGACAGAAATCACATTGCTTTAACA 281442
>seq4085
Length=6844556
Score = 176 bits (194), Expect = 1e-41
Identities = 171/218 (78%), Gaps = 13/218 (6%)
Strand=Plus/Plus
Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGC----TCCCACTTATTCTACACCTCTCA 260
|| ||||||||||||| || ||| | | || ||| |||||| ||||| || |||
Sbjct 254330 AGTGTAGTGGTATTTCGCTGGCG---ATATTGCCATCTCCTACTTATGCTACATCTATCA 254386
Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320
|| || | || | ||||||| ||||| ||| ||||||| |||||||||| |||
Sbjct 254387 TCTCTTT--ATAATACCAGACTAGAATCAAGTTCATTAGGGTCTCTTTTCCCCGCTAATT 254444
Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380
|||| | | |||||||||| |||||||||||| ||||||| |||| ||||||||
Sbjct 254445 TTTCCAAACTCATTCCCTTGGCAGTGGTTTCGCTAAATAGTAG----GGACTGTGGGAAT 254500
Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
||||||||||||||||||||||||||||||||||||||
Sbjct 254501 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 254538
>seq5088
Length=261818
Score = 163 bits (180), Expect = 9e-38
Identities = 154/196 (79%), Gaps = 9/196 (5%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| |||||||| ||||| |||| | ||| | | ||| | | |||||||| || ||
Sbjct 105753 CTTCCACTTATGCTACATCTCTTATGTCTTCTTACAGTGCCAGACTAGAG-----CTTAA 105699
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||| | || ||| |||||||||| |||||| || ||| |||||
Sbjct 105698 TAGGGTCTTCTTTTTTCTCTAATTTTTTCAAGCCCGTTTCCTTGGTAGTATTTTTGCTAG 105639
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 105638 ----TAGATAGGAACAGTGGGAATCTTGTTAATCCATTCATGCGCGTTACTAATTAGATA 105583
Query 417 ACGAGGCATTTGGCTA 432
||||||||||||||||
Sbjct 105582 ACGAGGCATTTGGCTA 105567
>seq4417
Length=1354397
Score = 140 bits (154), Expect = 1e-30
Identities = 158/210 (75%), Gaps = 14/210 (7%)
Strand=Plus/Plus
Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233
|||||| | || ||||||| ||||||| | |||||||||||||| || |||
Sbjct 1322580 TCCGCTCAACCGAGTAAGTAAGGAAACGATGAAAATAGTGGTATTTCAC---CGGCGATG 1322636
Query 234 CGGC----TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289
|| ||||| |||| |||||| | | ||| | ||| | | ||||| ||||
Sbjct 1322637 TTGCCATTTCCCATTTATGCTACACTTT--ATGTCTCCTTACAGTGCCAGACTAAAGTCT 1322694
Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349
|||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||
Sbjct 1322695 AGCTCAACAGGGTCTTCTTTCCCCATTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTT 1322754
Query 350 TCGCTAGATAG-----TAGATAGGGACAGT 374
||||||||||| ||||||||||||||
Sbjct 1322755 TCGCTAGATAGTACAATAGATAGGGACAGT 1322784
Score = 109 bits (120), Expect = 2e-21
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| | | ||||||| ||| |||| |||||||| |||||||||||
Sbjct 1322360 CTTTTGCTCTACGCGGGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGATACCTGCGTTATT 1322419
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||||||| ||||||||| |||||||||| |||| || |||| || | ||||||
Sbjct 1322420 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 1322479
>seq5696
Length=2073310
Score = 105 bits (116), Expect = 2e-20
Identities = 66/71 (93%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1118680 GTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTAGGTAGAAATCA 1118739
Query 521 CATTGCGTCAA 531
|||||| ||||
Sbjct 1118740 CATTGCCTCAA 1118750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635104569728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |