Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1587 120 5e-25 seq536 120 5e-25 seq1152 111 2e-22 seq322 111 2e-22 seq756 109 8e-22 seq556 109 8e-22 seq577 107 3e-21 >seq1587 Length=48728 Score = 120 bits (132), Expect = 5e-25 Identities = 129/166 (78%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 42177 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 42120 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 42119 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 42060 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT 165 ||||||||| |||| || || | ||| || ||| | | ||||| Sbjct 42059 ACCCGGACCGCTCGGTCAGGGAG---GACACGCTGATTCCTTCAGT 42017 Score = 120 bits (132), Expect = 5e-25 Identities = 129/166 (78%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 44999 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 44942 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 44941 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 44882 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT 165 ||||||||| |||| || || | ||| || ||| | | ||||| Sbjct 44881 ACCCGGACCGCTCGGTCAGGGAG---GACACGCTGATTCCTTCAGT 44839 >seq536 Length=16808 Score = 120 bits (132), Expect = 5e-25 Identities = 129/166 (78%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 598 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 655 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 656 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 715 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT 165 ||||||||| |||| || || | ||| || ||| | | ||||| Sbjct 716 ACCCGGACCGCTCGGTCAGGGAG---GACACGCTGATTCCTTCAGT 758 Score = 111 bits (122), Expect = 2e-22 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5557 TTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 5616 Query 212 TATTGCCTCAAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGAA 255 ||||| ||||| || |||| | ||| ||| | | | |||||| || Sbjct 5617 TATTG-CTCAATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 5659 >seq1152 Length=1640 Score = 111 bits (122), Expect = 2e-22 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 TTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 1233 Query 212 TATTGCCTCAAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGAA 255 ||||| ||||| || |||| | ||| ||| | | | |||||| || Sbjct 1234 TATTG-CTCAATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 1276 >seq322 Length=1026 Score = 111 bits (122), Expect = 2e-22 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 TTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 634 Query 212 TATTGCCTCAAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGAA 255 ||||| ||||| || |||| | ||| ||| | | | |||||| || Sbjct 635 TATTG-CTCAATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 677 >seq756 Length=12372 Score = 109 bits (120), Expect = 8e-22 Identities = 110/139 (79%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| ||||| Sbjct 2539 ACAAAGGGCAGGAACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTCCT 2482 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 |||| | | ||||||||||| | ||||| | ||||| | | |||| | |||| Sbjct 2481 CGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGTGGGTTAC 2422 Query 122 CCGGACCTGTCGGCCAAGG 140 |||| || ||||||| || Sbjct 2421 CCGGGCCGCTCGGCCAGGG 2403 >seq556 Length=3095 Score = 109 bits (120), Expect = 8e-22 Identities = 110/139 (79%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| ||||| Sbjct 1725 ACAAAGGGCAGGAACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTCCT 1668 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTAC 121 |||| | | ||||||||||| | ||||| | ||||| | | |||| | |||| Sbjct 1667 CGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGTGGGTTAC 1608 Query 122 CCGGACCTGTCGGCCAAGG 140 |||| || ||||||| || Sbjct 1607 CCGGGCCGCTCGGCCAGGG 1589 >seq577 Length=19300 Score = 107 bits (118), Expect = 3e-21 Identities = 85/97 (88%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5340 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTC 5282 Query 221 AAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGAA 255 || || |||| | ||| ||| | | | |||||| || Sbjct 5281 AATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 5247 Score = 107 bits (118), Expect = 3e-21 Identities = 85/97 (88%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 8425 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTC 8367 Query 221 AAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGAA 255 || || |||| | ||| ||| | | | |||||| || Sbjct 8366 AATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 8332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751984832630