Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1176 80.6 1e-13 seq536 80.6 1e-13 >seq1176 Length=17792 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || ||| |||| ||||||| ||| ||| | Sbjct 6772 GAACCCAAAAGCTTTGGTTTCCCGGAAGCTGCCCGCCGAGTCATCGGAGGAACGTCGGCG 6713 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 6712 GATCGCTAGCTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 6656 >seq536 Length=16808 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || ||| |||| ||||||| ||| ||| | Sbjct 5993 GAACCCAAAAGCTTTGGTTTCCCGGAAGCTGCCCGCCGAGTCATCGGAGGAACGTCGGCG 6052 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 6053 GATCGCTAGCTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 6109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278394565980