Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1530 170 4e-40 seq1176 170 4e-40 seq536 170 4e-40 >seq1530 Length=4154 Score = 170 bits (188), Expect = 4e-40 Identities = 214/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 3611 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 3670 Query 100 AAAGCAGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | || Sbjct 3671 AAAGCAGGCTAAAACTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CG 3729 Query 154 GTTCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| ||| ||||||||||||||| | | ||||| Sbjct 3730 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGAACGGATGGGGGC 3788 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| || ||||| Sbjct 3789 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAA 3848 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | | ||||||| |||| ||||||||||||| || Sbjct 3849 AGCATTTGCCAAAAACGCTTTCATTGATCA-AGAACGAAAGTTAGAGG 3895 >seq1176 Length=17792 Score = 170 bits (188), Expect = 4e-40 Identities = 214/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 6370 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 6429 Query 100 AAAGCAGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | || Sbjct 6430 AAAGCAGGCTAAAACTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CG 6488 Query 154 GTTCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| ||| ||||||||||||||| | | ||||| Sbjct 6489 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGAACGGATGGGGGC 6547 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| || ||||| Sbjct 6548 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAA 6607 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | | ||||||| |||| ||||||||||||| || Sbjct 6608 AGCATTTGCCAAAAACGCTTTCATTGATCA-AGAACGAAAGTTAGAGG 6654 >seq536 Length=16808 Score = 170 bits (188), Expect = 4e-40 Identities = 214/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 6395 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 6336 Query 100 AAAGCAGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | || Sbjct 6335 AAAGCAGGCTAAAACTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CG 6277 Query 154 GTTCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| ||| ||||||||||||||| | | ||||| Sbjct 6276 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGAACGGATGGGGGC 6218 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| || ||||| Sbjct 6217 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAA 6158 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | | ||||||| |||| ||||||||||||| || Sbjct 6157 AGCATTTGCCAAAAACGCTTTCATTGATCA-AGAACGAAAGTTAGAGG 6111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915180945536