Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1176 125 3e-26 seq1268 116 2e-23 >seq1176 Length=17792 Score = 125 bits (138), Expect = 3e-26 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 8614 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 8673 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| || ||| | Sbjct 8674 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAAC-TTGAA 8731 Query 159 AAGAGAGTTAAAAAGCACGTGAA 181 |||||||| || || ||||||| Sbjct 8732 GAGAGAGTTCAATAGTACGTGAA 8754 >seq1268 Length=9377 Score = 116 bits (128), Expect = 2e-23 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||||||||| ||||| ||| ||| |||| ||| |||||| ||| Sbjct 1812 GTTGTGACCCGAAAGATGGTGATCTATGACTGGTCAGGACGAAGTCAGGGGAAACCCTGA 1871 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | || |||||||||||| Sbjct 1872 TGGAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGAGTATAGGGGCGA 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079955341100