Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1993 239 8e-61 seq1008 239 8e-61 seq1176 226 5e-57 seq998 226 5e-57 seq1391 136 7e-30 seq886 136 7e-30 seq536 134 2e-29 seq1482 129 1e-27 seq1468 127 3e-27 seq10 127 3e-27 seq2006 118 2e-24 seq8 107 3e-21 seq1027 87.8 3e-15 >seq1993 Length=18336 Score = 239 bits (264), Expect = 8e-61 Identities = 187/219 (85%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 67 TCTAAACCC-AGCTCACGTTCCCTATTAGTGGGTGA--ACAATCCAACGCTTACCGAATT 123 ||||||| | | |||||||||||| |||| ||| | ||||||| |||||| |||||| Sbjct 17536 TCTAAACTCTATCTCACGTTCCCTCTTAGCGGGATATAACAATCCGACGCTTGGCGAATT 17595 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 17596 CTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA 17655 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||| ||||||||||||||||||||||||||||||||||| ||||||| || || Sbjct 17656 CGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAA 17715 Query 244 A--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| | | | |||||||||||||||| ||||| Sbjct 17716 ACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 17752 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 87 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 146 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 147 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAC 190 >seq1008 Length=6727 Score = 239 bits (264), Expect = 8e-61 Identities = 187/219 (85%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 67 TCTAAACCC-AGCTCACGTTCCCTATTAGTGGGTGA--ACAATCCAACGCTTACCGAATT 123 ||||||| | | |||||||||||| |||| ||| | ||||||| |||||| |||||| Sbjct 122 TCTAAACTCTATCTCACGTTCCCTCTTAGCGGGATATAACAATCCGACGCTTGGCGAATT 181 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 182 CTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA 241 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||| ||||||||||||||||||||||||||||||||||| ||||||| || || Sbjct 242 CGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAA 301 Query 244 A--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| | | | |||||||||||||||| ||||| Sbjct 302 ACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 338 >seq1176 Length=17792 Score = 226 bits (250), Expect = 5e-57 Identities = 177/208 (85%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTG-AACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||| | || | |||| |||| |||||||| |||||| |||||||||||||| | Sbjct 17713 AGCTCAAGGTCTCCGTTAGCGGGTATAACAATCCGACGCTTGGCGAATTCTGCTTCGCAA 17654 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 17653 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGC 17594 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGG 252 ||||||||||||||||||||||||||||||||| ||||||| || ||| ||| | Sbjct 17593 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA-- 17536 Query 253 GACTAAAGGATCGATAGGCCACACTTTC 280 | | |||||||||||||||| ||||| Sbjct 17535 GCCAAAAGGATCGATAGGCCGTGCTTTC 17508 >seq998 Length=7948 Score = 226 bits (250), Expect = 5e-57 Identities = 177/208 (85%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTG-AACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||| | || | |||| |||| |||||||| |||||| |||||||||||||| | Sbjct 1348 AGCTCAAGGTCTCCGTTAGCGGGTATAACAATCCGACGCTTGGCGAATTCTGCTTCGCAA 1289 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 1288 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGC 1229 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGG 252 ||||||||||||||||||||||||||||||||| ||||||| || ||| ||| | Sbjct 1228 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA-- 1171 Query 253 GACTAAAGGATCGATAGGCCACACTTTC 280 | | |||||||||||||||| ||||| Sbjct 1170 GCCAAAAGGATCGATAGGCCGTGCTTTC 1143 Score = 136 bits (150), Expect = 7e-30 Identities = 95/107 (89%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 7724 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 7665 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 | ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 7664 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAAAAT 7618 >seq1391 Length=2594 Score = 136 bits (150), Expect = 7e-30 Identities = 95/107 (89%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 2249 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 2308 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 | ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 2309 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAAAAT 2355 >seq886 Length=1495 Score = 136 bits (150), Expect = 7e-30 Identities = 95/107 (89%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 1207 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 1266 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 | ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1267 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAAAAT 1313 >seq536 Length=16808 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 14855 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 14914 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 14915 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAC 14958 >seq1482 Length=1992 Score = 129 bits (142), Expect = 1e-27 Identities = 87/96 (91%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 12 ATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 ||||| || | ||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1988 ATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA 1929 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||||||||||||||||||| ||||||| ||| Sbjct 1928 AACCCAGCTCACGTTCCCTATTAGCGGGTGAAAAAT 1893 >seq1468 Length=8509 Score = 127 bits (140), Expect = 3e-27 Identities = 93/107 (87%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 4207 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 4148 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 | |||||||||||||||||||| |||||||||||| | ||||| ||| Sbjct 4147 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGCGAGTGAAAAAT 4101 >seq10 Length=7222678 Score = 127 bits (140), Expect = 3e-27 Identities = 93/107 (87%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | ||||| |||||| |||||||||||||||||| |||| Sbjct 1739276 TACTGAGCAGGATTACCATCGCAACGACGAGTCATCTGTAGGGTAAAACTAACCTATCTC 1739335 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 | |||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1739336 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTATCGGGTGAAAAAT 1739382 >seq2006 Length=3850 Score = 118 bits (130), Expect = 2e-24 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 25 CGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTC-AC 82 ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| || Sbjct 3848 CGACGAGTCATCAGTAGGGTAAAACTAGCCTGTCTCACGACGGTCTAAACCCAGCTCGAC 3789 Query 83 GTTCCCTATTAGTGGGTGAACAAT 106 |||||||||||| ||||||| ||| Sbjct 3788 GTTCCCTATTAGCGGGTGAAAAAT 3765 >seq8 Length=14581690 Score = 107 bits (118), Expect = 3e-21 Identities = 88/107 (82%), Gaps = 9/107 (8%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||| Sbjct 807750 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACC------ 807697 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 807696 --GACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAAAAT 807652 >seq1027 Length=2102 Score = 87.8 bits (96), Expect = 3e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 2102 ACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAAAAAT 2047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854382211392