Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1530 109 6e-22 seq1176 109 6e-22 seq536 109 6e-22 >seq1530 Length=4154 Score = 109 bits (120), Expect = 6e-22 Identities = 138/185 (75%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-----CTTTGCTCGAATAC-AT 63 || ||||||||||| ||||||||| | | ||||||||| ||| || |||||| | Sbjct 3642 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAAAACTTCGCCTGAATACTGT 3701 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC-- 121 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || Sbjct 3702 GTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGA 3759 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| | | | ||||| | ||||| || | |||||||||||| Sbjct 3760 GGTAATGATTAATAGGAACGGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 3819 Query 182 TGGAT 186 ||||| Sbjct 3820 TGGAT 3824 >seq1176 Length=17792 Score = 109 bits (120), Expect = 6e-22 Identities = 138/185 (75%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-----CTTTGCTCGAATAC-AT 63 || ||||||||||| ||||||||| | | ||||||||| ||| || |||||| | Sbjct 6401 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAAAACTTCGCCTGAATACTGT 6460 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC-- 121 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || Sbjct 6461 GTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGA 6518 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| | | | ||||| | ||||| || | |||||||||||| Sbjct 6519 GGTAATGATTAATAGGAACGGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 6578 Query 182 TGGAT 186 ||||| Sbjct 6579 TGGAT 6583 >seq536 Length=16808 Score = 109 bits (120), Expect = 6e-22 Identities = 138/185 (75%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-----CTTTGCTCGAATAC-AT 63 || ||||||||||| ||||||||| | | ||||||||| ||| || |||||| | Sbjct 6364 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAAAACTTCGCCTGAATACTGT 6305 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC-- 121 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || Sbjct 6304 GTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGA 6247 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| | | | ||||| | ||||| || | |||||||||||| Sbjct 6246 GGTAATGATTAATAGGAACGGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 6187 Query 182 TGGAT 186 ||||| Sbjct 6186 TGGAT 6182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511989673280