Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1587 120 6e-25 seq1152 120 6e-25 seq577 120 6e-25 seq536 120 6e-25 seq322 120 6e-25 seq756 113 9e-23 seq556 113 9e-23 >seq1587 Length=48728 Score = 120 bits (132), Expect = 6e-25 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 |||| |||||| | | || ||| ||||||| ||||| | | |||||||| || | | Sbjct 42051 GGTCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGCAATTGTTCCCC 42110 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 | |||||||||| || |||||||||| ||||| ||| |||||||||||||||||||||| Sbjct 42111 ATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCC 42170 Query 323 TTTGTA 328 |||||| Sbjct 42171 TTTGTA 42176 Score = 120 bits (132), Expect = 6e-25 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 |||| |||||| | | || ||| ||||||| ||||| | | |||||||| || | | Sbjct 44873 GGTCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGCAATTGTTCCCC 44932 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 | |||||||||| || |||||||||| ||||| ||| |||||||||||||||||||||| Sbjct 44933 ATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCC 44992 Query 323 TTTGTA 328 |||||| Sbjct 44993 TTTGTA 44998 >seq1152 Length=1640 Score = 120 bits (132), Expect = 6e-25 Identities = 89/100 (89%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 1280 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 1223 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||| Sbjct 1222 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 1183 >seq577 Length=19300 Score = 120 bits (132), Expect = 6e-25 Identities = 89/100 (89%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 5243 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 5300 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||| Sbjct 5301 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 5340 Score = 120 bits (132), Expect = 6e-25 Identities = 89/100 (89%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 8328 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 8385 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||| Sbjct 8386 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 8425 >seq536 Length=16808 Score = 120 bits (132), Expect = 6e-25 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 |||| |||||| | | || ||| ||||||| ||||| | | |||||||| || | | Sbjct 724 GGTCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGCAATTGTTCCCC 665 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 | |||||||||| || |||||||||| ||||| ||| |||||||||||||||||||||| Sbjct 664 ATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCC 605 Query 323 TTTGTA 328 |||||| Sbjct 604 TTTGTA 599 Score = 120 bits (132), Expect = 6e-25 Identities = 89/100 (89%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 5663 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 5606 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||| Sbjct 5605 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 5566 >seq322 Length=1026 Score = 120 bits (132), Expect = 6e-25 Identities = 89/100 (89%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 681 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 624 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||| Sbjct 623 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 584 >seq756 Length=12372 Score = 113 bits (124), Expect = 9e-23 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| || | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 2403 CCCTGGCCGAGCGGCCCGGGTAACCCACTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 2462 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 2463 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 2522 Query 311 ACGTCCCTGCCCTTTGT 327 |||| |||||||||||| Sbjct 2523 ACGTTCCTGCCCTTTGT 2539 >seq556 Length=3095 Score = 113 bits (124), Expect = 9e-23 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| || | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 1589 CCCTGGCCGAGCGGCCCGGGTAACCCACTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 1648 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1649 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1708 Query 311 ACGTCCCTGCCCTTTGT 327 |||| |||||||||||| Sbjct 1709 ACGTTCCTGCCCTTTGT 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947180279296