Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq536 462 7e-128 seq1176 452 1e-124 seq634 269 8e-70 seq577 269 8e-70 >seq536 Length=16808 Score = 462 bits (512), Expect = 7e-128 Identities = 426/531 (80%), Gaps = 31/531 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 6623 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 6682 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6683 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 6742 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 6743 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 6802 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 6803 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 6862 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGCG 295 | || || |||||| ||| |||||||| || |||||||| | ||| | |||| Sbjct 6863 GCGAGACCGTGCGATCAGCGTAAAGTTATTCAGATTCACCAAGTTG-TACGATGACGGCG 6921 Query 296 -------------TTGGTTTTTTATCTAATAAATACACCCCTTCCG----AAGTCGGGG- 337 |||| |||| |||||||||| | | ||||||| ||||| | Sbjct 6922 AAACCGCCACCGATTGG-TTTTGATCTAATAAAAGCGCTCCTTCCGTCTCCGGTCGGAGC 6980 Query 338 -TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTA 393 | || |||||||||||||||||||||||||| |||||||| ||| || ||||| | Sbjct 6981 TCTGTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT-GGGTACGA 7039 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 || || ||| ||||||||||||||||||| ||||| ||||||| || | | |||| | Sbjct 7040 TCTAAGGAACCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTA-ATTTGGCTTGT 7098 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7099 ACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 7149 >seq1176 Length=17792 Score = 452 bits (500), Expect = 1e-124 Identities = 425/531 (80%), Gaps = 33/531 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 6143 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTT-TCGTCACTACC 6085 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6084 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTC-TTGGATGTGGTAGCCGT 6026 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 6025 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 5966 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 5965 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 5906 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGCG 295 | || || |||||| ||| |||||||| || |||||||| | ||| | |||| Sbjct 5905 GCGAGACCGTGCGATCAGCGTAAAGTTATTCAGATTCACCAAGTTG-TACGATGACGGCG 5847 Query 296 -------------TTGGTTTTTTATCTAATAAATACACCCCTTCCG----AAGTCGGGG- 337 |||| |||| |||||||||| | | ||||||| ||||| | Sbjct 5846 AAACCGCCACCGATTGG-TTTTGATCTAATAAAAGCGCTCCTTCCGTCTCCGGTCGGAGC 5788 Query 338 -TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTA 393 | || |||||||||||||||||||||||||| |||||||| ||| || ||||| | Sbjct 5787 TCTGTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT-GGGTACGA 5729 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 || || ||| ||||||||||||||||||| ||||| ||||||| || | | |||| | Sbjct 5728 TCTAAGGAACCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTA-ATTTGGCTTGT 5670 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5669 ACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 5619 >seq634 Length=16669 Score = 269 bits (298), Expect = 8e-70 Identities = 313/419 (75%), Gaps = 35/419 (8%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 16388 TTCCTGGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAACCGAACCCTGATTCCCC 16329 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||||||||| |||||||||||| | |||| |||||| ||| | || ||||| | Sbjct 16328 GTTACCCGTTACAACCATGGTAGGCGCAGAACCTATCATCGACAGTCGGTAAGGCAGTCA 16269 Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA--TTCGTTAAGTTATTATGAATCAC 276 |||||| || | ||||||| | || || ||||| | || |||||||| || |||| Sbjct 16268 TTTGAAAGATGCGTCGCCGGTGCGAGACCGTGCGATCTGCGGAAAGTTATTCAGATTCAC 16209 Query 277 CAAGGAGCCCCGA--AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG----AA 330 |||| | ||| | |||| || | | ||||||| Sbjct 16208 CAAGTTG-TACGATGACGGCG------------------AAACCGCTCCTTCCGTCTCCG 16168 Query 331 GTCGGGG--TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTA 385 ||||| | | || ||||||||||||||||||||||||| ||| |||| ||| || Sbjct 16167 GTCGGAGCTCTGTTTTCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGT- 16109 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || || ||| || | | ||||||||||||||||||| ||||| ||||||| ||| Sbjct 16108 GGGGACCATCTAAGGAGCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTAT--T 16051 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||| |||| ||||||||||||| |||| |||||||||||||||||||||||| ||| Sbjct 16050 TGGCTTGTACTGAGACATGCATGGCCTAATTTTTGAGACAAGCATATGACTACTGTCAG 15992 >seq577 Length=19300 Score = 269 bits (298), Expect = 8e-70 Identities = 313/419 (75%), Gaps = 35/419 (8%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 4749 TTCCTGGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAACCGAACCCTGATTCCCC 4690 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||||||||| |||||||||||| | |||| |||||| ||| | || ||||| | Sbjct 4689 GTTACCCGTTACAACCATGGTAGGCGCAGAACCTATCATCGACAGTCGGTAAGGCAGTCA 4630 Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA--TTCGTTAAGTTATTATGAATCAC 276 |||||| || | ||||||| | || || ||||| | || |||||||| || |||| Sbjct 4629 TTTGAAAGATGCGTCGCCGGTGCGAGACCGTGCGATCTGCGGAAAGTTATTCAGATTCAC 4570 Query 277 CAAGGAGCCCCGA--AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG----AA 330 |||| | ||| | |||| || | | ||||||| Sbjct 4569 CAAGTTG-TACGATGACGGCG------------------AAACCGCTCCTTCCGTCTCCG 4529 Query 331 GTCGGGG--TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTA 385 ||||| | | || ||||||||||||||||||||||||| ||| |||| ||| || Sbjct 4528 GTCGGAGCTCTGTTTTCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGT- 4470 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || || ||| || | | ||||||||||||||||||| ||||| ||||||| ||| Sbjct 4469 GGGGACCATCTAAGGAGCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTAT--T 4412 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||| |||| ||||||||||||| |||| |||||||||||||||||||||||| ||| Sbjct 4411 TGGCTTGTACTGAGACATGCATGGCCTAATTTTTGAGACAAGCATATGACTACTGTCAG 4353 Score = 269 bits (298), Expect = 8e-70 Identities = 313/419 (75%), Gaps = 35/419 (8%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 7834 TTCCTGGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAACCGAACCCTGATTCCCC 7775 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||||||||| |||||||||||| | |||| |||||| ||| | || ||||| | Sbjct 7774 GTTACCCGTTACAACCATGGTAGGCGCAGAACCTATCATCGACAGTCGGTAAGGCAGTCA 7715 Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA--TTCGTTAAGTTATTATGAATCAC 276 |||||| || | ||||||| | || || ||||| | || |||||||| || |||| Sbjct 7714 TTTGAAAGATGCGTCGCCGGTGCGAGACCGTGCGATCTGCGGAAAGTTATTCAGATTCAC 7655 Query 277 CAAGGAGCCCCGA--AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG----AA 330 |||| | ||| | |||| || | | ||||||| Sbjct 7654 CAAGTTG-TACGATGACGGCG------------------AAACCGCTCCTTCCGTCTCCG 7614 Query 331 GTCGGGG--TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTA 385 ||||| | | || ||||||||||||||||||||||||| ||| |||| ||| || Sbjct 7613 GTCGGAGCTCTGTTTTCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGT- 7555 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || || ||| || | | ||||||||||||||||||| ||||| ||||||| ||| Sbjct 7554 GGGGACCATCTAAGGAGCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTAT--T 7497 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||| |||| ||||||||||||| |||| |||||||||||||||||||||||| ||| Sbjct 7496 TGGCTTGTACTGAGACATGCATGGCCTAATTTTTGAGACAAGCATATGACTACTGTCAG 7438 Score = 159 bits (176), Expect = 1e-36 Identities = 135/163 (83%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAA 401 ||||||||||||||||||||||||| ||| |||| ||| || || || ||| || | Sbjct 2957 CATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGG-ACCATCTAAGGA 2899 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 | ||||||||||||||||||| ||||| ||||||| ||| | |||| |||| |||| Sbjct 2898 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTATT--TGGCTTGTACTGAGAC 2841 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||| |||||||||||||||||||||||| ||| Sbjct 2840 ATGCATGGCCTAATTTTTGAGACAAGCATATGACTACTGTCAG 2798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510368553472