Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 363 1e-95
seq5 277 1e-69
>seq4
Length=12290766
Score = 363 bits (402), Expect = 1e-95
Identities = 1229/1896 (65%), Gaps = 70/1896 (4%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||| || || | |||||| |||| || ||||| | ||||||||| || ||
Sbjct 1759637 ATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCTGT 1759578
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
||| | || | ||| | ||||||||||| || || | |||||||||| |
Sbjct 1759577 CTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCCCATAATTCGGGGC 1759518
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCA 65255
|| | ||| ||||||| |||||||||||| || || |||| || | ||| || ||||
Sbjct 1759517 CGCAATATGAATATTCATCGACTGACTCTGGTCAAT-AAACGCGCCTCTATCAGCCGCCA 1759459
Query 65256 TGTCAATGATACGACGTCC--CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313
| ||||| ||| || | | ||| ||||||||||| || || ||||| | | ||
Sbjct 1759458 TATCAATAATA--ACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAAATC 1759401
Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373
|||||| || ||||| || | |||||| | |||||||| |||| |||
Sbjct 1759400 GTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTTCAT 1759341
Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433
|| || ||| | ||| || | | || | | || ||| |||| | ||||||
Sbjct 1759340 CGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGACTTG 1759281
Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493
||||| || |||| || || | |||||||| || || ||| ||||| |||||
Sbjct 1759280 AAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGATTC 1759221
Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553
| | || || | |||||||||||| || || || ||||| ||||| | | | || ||
Sbjct 1759220 ATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGAATT 1759161
Query 65554 TCGCAATCCGTTCATTT--CAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611
|| | |||| |||| | || || | ||| ||| ||| | ||||| |||
Sbjct 1759160 GCGAACACCGT--ATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACA--AATTTG 1759105
Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671
| | | ||| |||||| || | |||| | || |||| ||||||| ||
Sbjct 1759104 TAG----GAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCT 1759049
Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731
|| | || ||| || | || | ||| |||| || || | ||| | ||| |
Sbjct 1759048 TCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCG 1758989
Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791
|||||| || |||||||| | || || || | ||||| ||| || | |||
Sbjct 1758988 TAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGC 1758929
Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851
|| | || || | || | || ||||| || ||||| ||||| || | || | ||
Sbjct 1758928 ATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGG 1758869
Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911
|||| ||| || | |||||| || | ||| |||||||| | ||| || | |||
Sbjct 1758868 CGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTC 1758809
Query 65912 AAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970
||||| || ||| || | || | | | | ||||| || || |
Sbjct 1758808 AAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTT---------AAAGTCGTAG 1758758
Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030
|| || || | | ||| ||| || | ||| | || || | ||| |||||
Sbjct 1758757 CCGCTC----CTGTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGAC 1758702
Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090
|| || ||||| || | ||| ||||||| ||||| ||||| | ||| |||| | ||
Sbjct 1758701 GGCGATTTCGTCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGAT 1758642
Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150
||||| ||||| ||||| || || || | || ||||| || ||||| | |||||| ||
Sbjct 1758641 AGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGG 1758582
Query 66151 AGTGCCGGTCTCAACTTGG--GACTCAATGATGGCGTGCCAAAGAGCGCGTGC-CTTCAC 66207
||||| ||||| || ||| ||| ||| || ||| |||||| | || || | ||
Sbjct 1758581 GGTGCCAGTCTCCACCTGGGAGACGCAA--ATAGCGCGCCAAACGTCCCGCGCTGGTAAC 1758524
Query 66208 CGT---ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264
|| || || || ||| | ||||| | |||||| | | |||||| |||
Sbjct 1758523 TGTCTAACATAGCG----ACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTC 1758468
Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324
||||| |||| || | ||| ||| ||||||||||||||| ||||| | | ||
Sbjct 1758467 GCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTC 1758408
Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384
| || || || ||||| || | ||||| |||| | ||| |||| | ||||||||
Sbjct 1758407 GTTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGC 1758348
Query 66385 TCGTTGCTCCTCAAT-GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443
| | ||| ||| | ||||| ||||| ||||| | || || || || |||||||
Sbjct 1758347 CCTTAGCTGCTCCTTCCCCGTG-TTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCAT 1758289
Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503
|||| || || ||||| || ||| | | ||| | |||| || |||||||| ||||
Sbjct 1758288 GCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGT 1758229
Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG--TTAGATT------- 66554
|||| ||| ||||| || || ||||| | || || | |||| | ||| |
Sbjct 1758228 AGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGG 1758169
Query 66555 TGCC------ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608
|||| | |||| ||| | || || ||| ||||||| | ||||| | | |
Sbjct 1758168 TGCCGGCCAAAGTGGT-CCG--AAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAATACTGA 1758112
Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668
|| | ||| || ||||| || || || ||||| | || || || | ||||
Sbjct 1758111 CGCCTAGACCGCCTGCCGTTTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGC 1758052
Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728
| || | ||| | || || | ||| |||| || ||||||||||||||||
Sbjct 1758051 CCTCGAGATTGTCCTCGGGGAGAGTTACGAGAAAGCAGGAGGAGAGTTGGGGTTTGGGTG 1757992
Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788
| || || |||||||| || || | ||||| || ||||| | |||||||| ||||
Sbjct 1757991 TTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAGTTGT 1757932
Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGA 66848
| || |||||| | | || |||| | ||| || || |||| || ||||| || |
Sbjct 1757931 AAGTTTCGATGGCTGAGTCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCA 1757872
Query 66849 GGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904
|| ||| || || || || | |||| ||||| | | |||||||| || ||
Sbjct 1757871 TGTGTTGGGGGCGCTCAACGATTTTGCCG----TTGATTTTAAGCAAGTAGGAACGCTCG 1757816
Query 66905 AGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940
||||| |||| ||| ||||| |||| |||||||
Sbjct 1757815 AGGGTTTTGAAACCGAAGTAATTGTAAGAGAAATCG 1757780
>seq5
Length=15459558
Score = 277 bits (306), Expect = 1e-69
Identities = 599/894 (67%), Gaps = 14/894 (2%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
|| ||||| |||| || || || || || || || | || |||||| |||| ||
Sbjct 2624153 GAGCCCCTTCTGCAGGAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGAC 2624212
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|||||| || ||||| | |||||||| || || |||||| || || || ||||||
Sbjct 2624213 ATTTGGGACAAATACAAGCAAGCGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTTG 2624272
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203
|| ||||| || | |||||| || | || ||| ||| | ||||||
Sbjct 2624273 TCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAACGCTACTTCATTTCG 2624332
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| || | || || || || || || ||||| |||||||| || || | | || |
Sbjct 2624333 CACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGG 2624392
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| ||||||||||||||| | || || || || || ||||| ||||| || || ||
Sbjct 2624393 TTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATT 2624452
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
|| || |||| |||||||||||||| | | ||||| |||||||| |||| |
Sbjct 2624453 GAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCAG 2624512
Query 61384 GAACGTGAACGA----TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGC 61439
|| ||| || ||||||||||| ||||||||| | || || ||| ||| ||
Sbjct 2624513 GA----GAAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGC 2624568
Query 61440 GGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499
|| |||||||| ||||| | ||| | | || || ||||| |||||| | ||||
Sbjct 2624569 CGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGC 2624628
Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559
||||| | ||||| || | || ||| ||| ||||| | || || ||| | ||
Sbjct 2624629 GTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAA 2624688
Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619
|| || |||||||| ||||| || || |||||| |||| || | ||||||||
Sbjct 2624689 AAAGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGG 2624748
Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679
| | ||||| |||||||| |||| | ||| | || ||||| | ||||| |
Sbjct 2624749 CCTACATTGCGATTTTGCCTGTTTGATGTTCTCTCACT---TGGTGCAGAAGCCGTCCAA 2624805
Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739
|| || | ||| | | || ||||| | ||||| ||||||| |||||||
Sbjct 2624806 AGAACGGATTCAAAGCATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGA 2624865
Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799
||||| || ||| | || || ||||| || | | |||| || || || |||||
Sbjct 2624866 AGCTTTACCAGTCAGCATGATTGGAATGAACTGCGCTTTGATGTGCCAATACATCGAATT 2624925
Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859
||| |||||| | |||||| ||| ||||| || ||||| || | | || ||
Sbjct 2624926 TGTGGCCGACAGATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCC 2624985
Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913
|| ||||||||| || ||||| || |||||||||||||| || |||||
Sbjct 2624986 GTTCGATTTCATGACGATTATTTCCAACGAAGGCAAGACGAATTTCTTTGAGAA 2625039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397557911960480
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