Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 363 1e-95 seq5 277 1e-69 >seq4 Length=12290766 Score = 363 bits (402), Expect = 1e-95 Identities = 1229/1896 (65%), Gaps = 70/1896 (4%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || | |||||| |||| || ||||| | ||||||||| || || Sbjct 1759637 ATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCTGT 1759578 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || | ||| | ||||||||||| || || | |||||||||| | Sbjct 1759577 CTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCCCATAATTCGGGGC 1759518 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCA 65255 || | ||| ||||||| |||||||||||| || || |||| || | ||| || |||| Sbjct 1759517 CGCAATATGAATATTCATCGACTGACTCTGGTCAAT-AAACGCGCCTCTATCAGCCGCCA 1759459 Query 65256 TGTCAATGATACGACGTCC--CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 | ||||| ||| || | | ||| ||||||||||| || || ||||| | | || Sbjct 1759458 TATCAATAATA--ACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAAATC 1759401 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 |||||| || ||||| || | |||||| | |||||||| |||| ||| Sbjct 1759400 GTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTTCAT 1759341 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 || || ||| | ||| || | | || | | || ||| |||| | |||||| Sbjct 1759340 CGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGACTTG 1759281 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||| || |||| || || | |||||||| || || ||| ||||| ||||| Sbjct 1759280 AAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGATTC 1759221 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 | | || || | |||||||||||| || || || ||||| ||||| | | | || || Sbjct 1759220 ATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGAATT 1759161 Query 65554 TCGCAATCCGTTCATTT--CAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || | |||| |||| | || || | ||| ||| ||| | ||||| ||| Sbjct 1759160 GCGAACACCGT--ATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACA--AATTTG 1759105 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | | | ||| |||||| || | |||| | || |||| ||||||| || Sbjct 1759104 TAG----GAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCT 1759049 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 || | || ||| || | || | ||| |||| || || | ||| | ||| | Sbjct 1759048 TCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCG 1758989 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 |||||| || |||||||| | || || || | ||||| ||| || | ||| Sbjct 1758988 TAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGC 1758929 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 || | || || | || | || ||||| || ||||| ||||| || | || | || Sbjct 1758928 ATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGG 1758869 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 |||| ||| || | |||||| || | ||| |||||||| | ||| || | ||| Sbjct 1758868 CGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTC 1758809 Query 65912 AAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 ||||| || ||| || | || | | | | ||||| || || | Sbjct 1758808 AAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTT---------AAAGTCGTAG 1758758 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 || || || | | ||| ||| || | ||| | || || | ||| ||||| Sbjct 1758757 CCGCTC----CTGTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGAC 1758702 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || || ||||| || | ||| ||||||| ||||| ||||| | ||| |||| | || Sbjct 1758701 GGCGATTTCGTCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGAT 1758642 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 ||||| ||||| ||||| || || || | || ||||| || ||||| | |||||| || Sbjct 1758641 AGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGG 1758582 Query 66151 AGTGCCGGTCTCAACTTGG--GACTCAATGATGGCGTGCCAAAGAGCGCGTGC-CTTCAC 66207 ||||| ||||| || ||| ||| ||| || ||| |||||| | || || | || Sbjct 1758581 GGTGCCAGTCTCCACCTGGGAGACGCAA--ATAGCGCGCCAAACGTCCCGCGCTGGTAAC 1758524 Query 66208 CGT---ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || || || ||| | ||||| | |||||| | | |||||| ||| Sbjct 1758523 TGTCTAACATAGCG----ACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTC 1758468 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| |||| || | ||| ||| ||||||||||||||| ||||| | | || Sbjct 1758467 GCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTC 1758408 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 | || || || ||||| || | ||||| |||| | ||| |||| | |||||||| Sbjct 1758407 GTTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGC 1758348 Query 66385 TCGTTGCTCCTCAAT-GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | | ||| ||| | ||||| ||||| ||||| | || || || || ||||||| Sbjct 1758347 CCTTAGCTGCTCCTTCCCCGTG-TTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCAT 1758289 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || || ||||| || ||| | | ||| | |||| || |||||||| |||| Sbjct 1758288 GCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGT 1758229 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG--TTAGATT------- 66554 |||| ||| ||||| || || ||||| | || || | |||| | ||| | Sbjct 1758228 AGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGG 1758169 Query 66555 TGCC------ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 |||| | |||| ||| | || || ||| ||||||| | ||||| | | | Sbjct 1758168 TGCCGGCCAAAGTGGT-CCG--AAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAATACTGA 1758112 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 || | ||| || ||||| || || || ||||| | || || || | |||| Sbjct 1758111 CGCCTAGACCGCCTGCCGTTTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGC 1758052 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 | || | ||| | || || | ||| |||| || |||||||||||||||| Sbjct 1758051 CCTCGAGATTGTCCTCGGGGAGAGTTACGAGAAAGCAGGAGGAGAGTTGGGGTTTGGGTG 1757992 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788 | || || |||||||| || || | ||||| || ||||| | |||||||| |||| Sbjct 1757991 TTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAGTTGT 1757932 Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGA 66848 | || |||||| | | || |||| | ||| || || |||| || ||||| || | Sbjct 1757931 AAGTTTCGATGGCTGAGTCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCA 1757872 Query 66849 GGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904 || ||| || || || || | |||| ||||| | | |||||||| || || Sbjct 1757871 TGTGTTGGGGGCGCTCAACGATTTTGCCG----TTGATTTTAAGCAAGTAGGAACGCTCG 1757816 Query 66905 AGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||||| |||| ||| ||||| |||| ||||||| Sbjct 1757815 AGGGTTTTGAAACCGAAGTAATTGTAAGAGAAATCG 1757780 >seq5 Length=15459558 Score = 277 bits (306), Expect = 1e-69 Identities = 599/894 (67%), Gaps = 14/894 (2%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 || ||||| |||| || || || || || || || | || |||||| |||| || Sbjct 2624153 GAGCCCCTTCTGCAGGAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGAC 2624212 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| || ||||| | |||||||| || || |||||| || || || |||||| Sbjct 2624213 ATTTGGGACAAATACAAGCAAGCGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTTG 2624272 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203 || ||||| || | |||||| || | || ||| ||| | |||||| Sbjct 2624273 TCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAACGCTACTTCATTTCG 2624332 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || || || || || || ||||| |||||||| || || | | || | Sbjct 2624333 CACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGG 2624392 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| ||||||||||||||| | || || || || || ||||| ||||| || || || Sbjct 2624393 TTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATT 2624452 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || |||| |||||||||||||| | | ||||| |||||||| |||| | Sbjct 2624453 GAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCAG 2624512 Query 61384 GAACGTGAACGA----TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGC 61439 || ||| || ||||||||||| ||||||||| | || || ||| ||| || Sbjct 2624513 GA----GAAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGC 2624568 Query 61440 GGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499 || |||||||| ||||| | ||| | | || || ||||| |||||| | |||| Sbjct 2624569 CGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGC 2624628 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | ||||| || | || ||| ||| ||||| | || || ||| | || Sbjct 2624629 GTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAA 2624688 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 || || |||||||| ||||| || || |||||| |||| || | |||||||| Sbjct 2624689 AAAGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGG 2624748 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | | ||||| |||||||| |||| | ||| | || ||||| | ||||| | Sbjct 2624749 CCTACATTGCGATTTTGCCTGTTTGATGTTCTCTCACT---TGGTGCAGAAGCCGTCCAA 2624805 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 || || | ||| | | || ||||| | ||||| ||||||| ||||||| Sbjct 2624806 AGAACGGATTCAAAGCATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGA 2624865 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 ||||| || ||| | || || ||||| || | | |||| || || || ||||| Sbjct 2624866 AGCTTTACCAGTCAGCATGATTGGAATGAACTGCGCTTTGATGTGCCAATACATCGAATT 2624925 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 ||| |||||| | |||||| ||| ||||| || ||||| || | | || || Sbjct 2624926 TGTGGCCGACAGATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCC 2624985 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || ||||||||| || ||||| || |||||||||||||| || ||||| Sbjct 2624986 GTTCGATTTCATGACGATTATTTCCAACGAAGGCAAGACGAATTTCTTTGAGAA 2625039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557911960480