Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq21045 246 5e-63 seq5744 167 4e-39 seq4167 167 4e-39 seq4836 77.0 5e-12 >seq21045 Length=2148 Score = 246 bits (272), Expect = 5e-63 Identities = 180/204 (88%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 26 CGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAAT 85 ||| |||| ||||||| |||||||||||||||| |||||||||||| ||| |||| |||| Sbjct 1717 CGCAAGCT-GATGACTTGCGCTTACTAGGAATT-CCTCGTTGAAGAGCAATAATTACAAT 1774 Query 86 GATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGAT 144 | |||||||||| ||||| | | ||||| ||||||||| ||||| ||||||||||| | Sbjct 1775 GCTCTATCCCCAGCACGACGGAGTTTCACAAGATTACCAAGACCTCTCGGCCAAGGT--T 1832 Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| || | | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1833 AGACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACA 1892 Query 205 GACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||| Sbjct 1893 GACCTGTTATTGCCTCAAACTTCC 1916 Score = 78.8 bits (86), Expect = 1e-12 Identities = 53/58 (91%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 |||||||||||||||||||| ||||||||||||| ||||| ||| |||||| |||||| Sbjct 1591 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACACGCACTTACTGGGAATT 1647 >seq5744 Length=1527 Score = 167 bits (184), Expect = 4e-39 Identities = 177/226 (78%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| |||||||| ||||| ||| |||||| |||||| | Sbjct 1409 GTACAAAGGGCAGGGACGTAATCAATGCGAGCTT-ATGACACGCACTTACTGGGAATT-C 1352 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 | ||| | | |||| || || | | ||||| | ||||| | |||| | || Sbjct 1351 CAGGTTCATGTG-AACAGTTTCAGTCCACAATCCCAAGCACGAAGGTGGTTCAGCGGTTT 1293 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||| ||| | || |||||| | ||| |||||||||||||| Sbjct 1292 ACCCGGACCTTTCGGCCTAGGA---ACACACGTTGATACCTTCATTGTAGCGCGCGTGCA 1236 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 1235 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 1191 >seq4167 Length=1117 Score = 167 bits (184), Expect = 4e-39 Identities = 177/226 (78%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| |||||||| ||||| ||| |||||| |||||| | Sbjct 690 GTACAAAGGGCAGGGACGTAATCAATGCGAGCTT-ATGACACGCACTTACTGGGAATT-C 633 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 | ||| | | |||| || || | | ||||| | ||||| | |||| | || Sbjct 632 CAGGTTCATGTG-AACAGTTTCAGTCCACAATCCCAAGCACGAAGGTGGTTCAGCGGTTT 574 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||| ||| | || |||||| | ||| |||||||||||||| Sbjct 573 ACCCGGACCTTTCGGCCTAGGA---ACACACGTTGATACCTTCATTGTAGCGCGCGTGCA 517 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 516 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 472 >seq4836 Length=2913 Score = 77.0 bits (84), Expect = 5e-12 Identities = 85/109 (78%), Gaps = 6/109 (6%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| | | || || | | || |||| ||||| | || |||||| | ||| Sbjct 993 TTACCCGGACCTTTTGACCTAG---AAACACACGTT-AATACCTTCATTGTAGCACACGT 1048 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | || ||| ||||||||||| |||||| ||||||||||| ||||| || Sbjct 1049 GTAGCACAGGACATCTAAGGGTATCACATACCTGTTATTG-CTCAATCT 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751805177245