Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5744 163 5e-38 seq4507 89.7 9e-16 seq25865 84.2 4e-14 seq3589 80.6 5e-13 seq22698 78.8 2e-12 seq711 77.0 6e-12 seq3747 73.4 7e-11 seq2394 73.4 7e-11 >seq5744 Length=1527 Score = 163 bits (180), Expect = 5e-38 Identities = 199/260 (77%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACA 123 ||||| || ||||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 298 GCCAGTACATTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATATGCCTGAATATT 357 Query 124 TT-AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT-GTTGGTTTCTAGGACC-- 179 || |||||||||||| ||||||||| | | | |||||||| ||||||| || |||| Sbjct 358 TTGTGCATGGAATAATGGAATAGGACCT-CTGCTCTATTTTCATTGGTTTTTA-GACCAA 415 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | |||||||||||||| ||| ||||| | | |||| ||| |||||| ||||| Sbjct 416 GAGGTAATGATTAATAGAAGCAGTTGGGGGCATTA-TATTACGATGTTAGAGGTAAAATT 474 Query 240 CTTGGAT-TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||||| | | | |||||| |||||||| || |||| |||||||||||||| Sbjct 475 CTTGGATCGTTTCGCTTACTAACATTAGCGAAAGCATTTGCCAAATATGTTTTCATTAAT 534 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||||| || Sbjct 535 CA-AGAACGAAAGTTAGAGG 553 >seq4507 Length=1736 Score = 89.7 bits (98), Expect = 9e-16 Identities = 173/242 (71%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACA 123 ||||| || ||||||||||| ||||||||||| | || |||||| | ||| ||||| Sbjct 1027 GCCAGTACATTTACTTTGAACAAATTAGAGTGCTTAAGGCAGGCTATATGCCTGAATATT 1086 Query 124 TT-AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT-GTTGGTTTCTAGGAC-CG 180 || | ||| ||||||| |||||||| | | | |||||||| ||||||| | | || | Sbjct 1087 TTGTGTATGTAATAATACAATAGGACCT-CTGCTCTATTTTCATTGGTTT-TTGAACAAG 1144 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 || ||||||||||| ||| | | |||||| || |||||||| |||| Sbjct 1145 AGGTTATGATTAATAGAAGCAGTTTAG---TTTAGTATTACGACGTTAGAGGTGATATTC 1201 Query 241 TTGGATTTATTGAAGACTAAC-TA-CTGCGAAAGCGTT--CACCAAGGATGTTTTCATTA 296 ||||| | |||| |||| || |||||||| || || ||| ||||||||||| Sbjct 1202 TTGGACCTTCGTAAGAATAACATATAAGCGAAAGCATTTGCAACAA-ACTGTTTTCATTA 1260 Query 297 AT 298 || Sbjct 1261 AT 1262 >seq25865 Length=1142 Score = 84.2 bits (92), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 21/213 (10%) Strand=Plus/Minus Query 80 TTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT-TGCTCGAATACATTA-GCATGGAATAA 137 ||||| | ||||||||| | ||||||||| | ||| ||||| || | ||||||||| Sbjct 1017 TTGAACATATTAGAGTGCTTAAAGCAGGCTATATGCCTGAATATTTTGTGTATGGAATAA 958 Query 138 TAGAATAGGACGTGCGGTTCTATTTT-GTTGGTTTCTAGGACCGCC----GTAATGATTA 192 | |||||| || | | || |||||| |||||||| ||| ||| | |||||||||| Sbjct 957 TGGAATAGAACCTCTGCTT-TATTTTCGTTGGTTTTTAG-ACCACAAGAGGTAATGATTA 900 Query 193 ATAG----------GGAT--AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 |||| || | ||| ||||| | |||||| || ||||||||||||| Sbjct 899 ATAGAAGCAGTTGGGGCTCGAGTTGGGGGCATTAGTATTACGACGTTAGAGGTGAAATTC 840 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| |||||||||| |||||||| Sbjct 839 TTGGACCGTCGGAAGACTAACATAAGCGAAAGC 807 >seq3589 Length=1146 Score = 80.6 bits (88), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATT- 125 || || ||||||||||| ||||||||||||| ||||||||| | ||| ||||| || Sbjct 563 AGTACATTTACTTTGAACAAATTAGAGTGTTTAAAGCAGGCTATATGCCTGAATATTTTG 504 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT-GTTGGTTTCTA 174 ||||||||||| ||||||||| | | |||||||| ||||||| || Sbjct 503 TACATGGAATAATGGAATAGGACCT-CTCCTCTATTTTCATTGGTTTTTA 455 >seq22698 Length=1024 Score = 78.8 bits (86), Expect = 2e-12 Identities = 119/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 157 CTATTTTG-TTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||| ||||||| ||| || | |||||||||||||| ||| |||| | | Sbjct 980 CTATTTTCATTGGTTTTTAGAACAAGAGGTAATGATTAATAGATGCAGTTGGGGCATT-A 922 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || || ||||||||||||||| || |||||| |||||||| Sbjct 921 GTATTACGACGTAAGGGGTGAAATTCTTGGACAGTCGTAAAACTAACATAAGCGAAAGCA 862 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||| |||||||| |||||||| ||||||||||||| || Sbjct 861 TTTGACAAAGATGTTTTTATTAATCA-AGAACGAAAGTTAGAGG 819 >seq711 Length=1172 Score = 77.0 bits (84), Expect = 6e-12 Identities = 77/96 (80%), Gaps = 8/96 (8%) Strand=Plus/Plus Query 224 TGTCAGAGGTGAAATTCTTGGATT-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 ||| |||||||||||||||||| | || | |||||||| |||||| | || |||| Sbjct 731 TGTTAGAGGTGAAATTCTTGGACTGTAGT-AAGACTAA-----GCGAAAACATTTGCCAA 784 Query 283 GGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||| ||||||||||||| || Sbjct 785 ATATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 819 >seq3747 Length=1489 Score = 73.4 bits (80), Expect = 7e-11 Identities = 138/193 (72%), Gaps = 15/193 (8%) Strand=Plus/Plus Query 137 ATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC--GCCGTAATGATTAA 193 || |||| |||| | | | |||||||| |||| || ||| ||| | ||||||||||| Sbjct 271 ATGGAATTGGACCT-CTGCTCTATTTTCATTGGGTTTTAG-ACCAAGAGGTAATGATTAA 328 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT----TA 249 | | |||| |||| | |||||| || ||||||| |||||||||| || Sbjct 329 TTGAAGTAGTTGGGGCATT-AGTATTACGACGTTAGAGGTGCAATTCTTGGACCGTCGTA 387 Query 250 ---TTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | | |||||||||| | || ||| || |||| |||||||||||||||| ||| Sbjct 388 ACTTCGTAAGACTAACTTAAGGGATAGCATTTGCCAAAAATGTTTTCATTAATCA-AGAA 446 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 447 CGAAAGTTAGAGG 459 >seq2394 Length=2782 Score = 73.4 bits (80), Expect = 7e-11 Identities = 120/169 (71%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACCGCCG-T 184 |||||| ||||| |||||||| | | | |||||||| ||||||| || | | | | Sbjct 543 GCATGGGATAATGTAATAGGACCT-CTGCTCTATTTTCCTTGGTTTTTATGCCAAAAGAT 485 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||| || ||| ||||| | | |||| || ||||||||||||||| | Sbjct 484 AATGATTAACAGAAGCAGTTGGGGGCATTAATATTAGGACGTTAGAGGTGAAATTCTTTG 425 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||| | |||||||| || |||| |||||||||| Sbjct 424 CCCGTCGTAAGACTAACAAAAGCGAAAGCATTTGCCAAAGATGTTTTCA 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914955248064