Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq21045 297 8e-78 seq4221 138 5e-30 seq3088 138 5e-30 seq22044 118 4e-24 seq19196 113 2e-22 seq9164 111 7e-22 seq1753 82.4 3e-13 seq19099 77.0 1e-11 >seq21045 Length=2148 Score = 297 bits (328), Expect = 8e-78 Identities = 322/420 (77%), Gaps = 13/420 (3%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 414 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 355 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 354 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 295 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 294 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 235 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT--CGGCCGGTGCACTCTTCTGCG 260 | ||||| || ||| | | || ||| || | | | || || Sbjct 234 TTGATCAGACATG--GTGTTTTGTGCCCTCTGCTCCTTGTGGGTAGGGGAATC-TCGCAT 178 Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 ||| |||||||||||| | || || ||||||| || ||||||| || | | Sbjct 177 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAA-TCCATAGGAATGTAGCTTGCCT 119 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG--CTCC 375 ||| || |||||||| | | ||||| | ||| || ||||||||| | ||| | Sbjct 118 CGGTAAGTATTATAGCCTGTG--GGAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 61 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 | | ||||||||||| |||||||| || || |||||||||| |||||||||||||||||| Sbjct 60 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 1 >seq4221 Length=1962 Score = 138 bits (152), Expect = 5e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| ||||| ||| |||| ||| | Sbjct 596 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACCTGATCAGGTCGAAGTCAGGG 537 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||||| || ||| |||||| ||||||||||||| |||| | ||||||| Sbjct 536 GAAACCCTGATGGAGGACCGTAGCAGTTCTGACGTGCAAATCGATTGTCAGAATTGGGTA 477 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 476 TAGGGGCGA 468 Score = 127 bits (140), Expect = 9e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | | ||| ||||||| Sbjct 1396 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATTTAAGGCTAAAT 1337 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 1336 ATAACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 1277 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||||||||| |||||||| Sbjct 1276 AGAGAGTTAAAAAGTACGTGAAA 1254 >seq3088 Length=1015 Score = 138 bits (152), Expect = 5e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| ||||| ||| |||| ||| | Sbjct 465 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACCTGATCAGGTCGAAGTCAGGG 524 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||||| || ||| |||||| ||||||||||||| |||| | ||||||| Sbjct 525 GAAACCCTGATGGAGGACCGTAGCAGTTCTGACGTGCAAATCGATTGTCAGAATTGGGTA 584 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 585 TAGGGGCGA 593 >seq22044 Length=1403 Score = 118 bits (130), Expect = 4e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| || | ||| | |||||| |||| |||| |||||| | | | ||| ||||||||| Sbjct 1078 TCGTGTAGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATTTAAGGCTAAATATA 1137 Query 103 GGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGA 162 | ||||||||||||| ||||||| |||| ||||| ||||||| ||| || | ||| Sbjct 1138 ACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAATAGA 1197 Query 163 GAGTTAAAAAGCACGTGAAA 182 ||||||||||| |||||||| Sbjct 1198 GAGTTAAAAAGTACGTGAAA 1217 >seq19196 Length=1255 Score = 113 bits (124), Expect = 2e-22 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| ||||| ||| |||| ||| | Sbjct 394 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACCTGATCAGGTCGAAGTCAGGG 335 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 ||||| ||| |||||| || ||| |||||| ||||||||||||| |||| Sbjct 334 GAAACCCTGATGGAGGACCGTAGCAGTTCTGACGTGCAAATCGATTGTCA 285 >seq9164 Length=1192 Score = 111 bits (122), Expect = 7e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||| ||||| ||| |||| ||| |||||| ||| |||||| || ||| Sbjct 376 ATGGTGAACTATACCTGATCAGGTCGAAGTCAGGGGAAACCCTGATGGAGGACCGTAGCA 317 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||||||||| |||| | |||||||||||||||| Sbjct 316 GTTCTGACGTGCAAATCGATTGTCAGAATTGGGTATAGGGGCGA 273 >seq1753 Length=1373 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 103 GGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGA 162 |||| |||||||||| | ||||||| |||| ||||| ||||||| ||| || | ||| Sbjct 1186 GGCCCGAGACCGATATCAAACAAGTACTGTGAGGGAAAGTTGAAAAGAACTCTGAATAGA 1245 Query 163 GAGTTAAAAAGCACGTGAAA 182 ||||||||||| |||||||| Sbjct 1246 GAGTTAAAAAGTACGTGAAA 1265 >seq19099 Length=1077 Score = 77.0 bits (84), Expect = 1e-11 Identities = 93/129 (72%), Gaps = 16/129 (12%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || || || ||||||||||||||||||| |||| || |||| ||| | Sbjct 315 GAGCGTATATGCTGTGACCCGAAAGATGGTGAAC-----CTGATCGGGCCGAAGTCAGGG 369 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| || ||||||| ||||||||||||| ||| | ||||||| Sbjct 370 GAAACCCTGATGT-----------GGTTCTGACGTGCAAATCGATTCTCAGAATTGGGTA 418 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 419 TAGGGGCGA 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079426362650