Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq13039 279 9e-73 seq21331 235 9e-60 seq10947 235 9e-60 seq17904 156 7e-36 seq4245 145 1e-32 seq18244 138 2e-30 seq7592 111 3e-22 >seq13039 Length=1682 Score = 279 bits (308), Expect = 9e-73 Identities = 201/231 (87%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 |||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| Sbjct 42 TAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGCA-TGGGTGAACAATCC 100 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 101 AACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 160 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228 | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 161 CGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA 220 Query 229 CACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279 ||||||| || ||| | | | ||||||||||||||||| |||| Sbjct 221 CACCTCTTGCTAAAAACTCTTTAAGCCAAAAGGATCGATAGGCCATGCTTT 271 >seq21331 Length=1048 Score = 235 bits (260), Expect = 9e-60 Identities = 156/172 (91%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 494 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 553 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 554 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 612 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||||||||||||||||||| |||||||||| |||||||||| |||| |||| Sbjct 613 ACATCGAAGGATCAAAAAGCGACGTCGCTATTAACGCTTGGCCGCCAAAAGC 664 >seq10947 Length=1736 Score = 235 bits (260), Expect = 9e-60 Identities = 158/175 (90%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 564 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 505 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||||||||||||||||| ||||| |||||| ||||||| |||||||| Sbjct 504 TGCA-TGGGTGAACAATCCAACGCTTAGTGAATTTTGCTTCATAATGATAGAAAGAGCCG 446 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 |||||||||||||||||||| ||||||||||||||| ||||| |||||||||| Sbjct 445 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGTTTGGCCTTCACAAGCCAG 391 >seq17904 Length=1261 Score = 156 bits (172), Expect = 7e-36 Identities = 197/273 (72%), Gaps = 47/273 (17%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 580 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 521 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||| ||| | | Sbjct 520 -TGCATGGGTGAACAATCCAACGCTT---------------GGT-------GAA-TGTGG 485 Query 150 ACATCGAAGGATC--AAAAAGCAACGTCGCTATGAACGCT---TGGCT---GC------- 194 | ||||||||||| ||||||| |||||||||| |||| | || | || Sbjct 484 ATATCGAAGGATCAAAAAAAGCGACGTCGCTATAAACGATGAATGATTAGAGCAAGTAGC 425 Query 195 --------CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||||||||||||||||||| ||||||| || ||| | Sbjct 424 CAGATAAGCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACT 365 Query 247 TCGAGGGACTAAAGGATCGATAGGCCACACTTT 279 | | ||||||||||||||||| |||| Sbjct 364 CTTTAAGCCAAAAGGATCGATAGGCCATGCTTT 332 >seq4245 Length=1210 Score = 145 bits (160), Expect = 1e-32 Identities = 154/202 (76%), Gaps = 16/202 (8%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT---ATTAGTGGGT---- 99 |||||||||| ||| ||| ||||||||||||||| |||| || || ||| || Sbjct 494 ACTAACCTGTTTCACGACTATCTAAACCCAGCTCAAGTTCTCTTGCATAAGTATGTACAT 435 Query 100 -GAACAAT-CCAACGCTTACCGAATTCTGCTTCGGTA-------TGATAGGAAGAGCCGA 150 | ||||| || |||||| ||||| || ||| | |||||| ||||| | | Sbjct 434 TGTACAATTCCCACGCTTGGTGAATTTTGTTTCACAAATCACAATGATAGAAAGAGGCAA 375 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||| ||||| ||||| ||| ||||||||||| |||||| ||| ||||| Sbjct 374 CATCGAAGGATCAGAAAGCGACGTCACTAGGAACGCTTGGCCATCACAAGTCAGATATCC 315 Query 211 CTGTGGTAACTTTTCTGGCACC 232 ||||||||||||||||| |||| Sbjct 314 CTGTGGTAACTTTTCTGACACC 293 >seq18244 Length=3066 Score = 138 bits (152), Expect = 2e-30 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||| Sbjct 961 GTCATCAGTAGGGTACAACTAACATGTCTCATGACAGTCTTAACCCAGCTCACGTTCCCT 1020 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 | ||||||| ||||||||||||| ||||| |||||| |||||||||||||| Sbjct 1021 -TGCATGGGTGATCAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGC 1077 >seq7592 Length=1195 Score = 111 bits (122), Expect = 3e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||| ||||| ||| ||||||||||| |||||||| ||||||| ||||| Sbjct 917 GAAGGATCAAAAAGCGACGTCACTACGAACGCTTGGCCGCCACAAGTCAGTTATTCCTGT 858 Query 215 GGTAACTTTTCTGGCACCTCTAGC 238 || |||||||||| ||||||| || Sbjct 857 GGCAACTTTTCTGACACCTCTTGC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854171507808