Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq5744 87.8 2e-15 seq3589 80.6 3e-13 >seq5744 Length=1527 Score = 87.8 bits (96), Expect = 2e-15 Identities = 91/114 (80%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 5 TCTAGAAACCAAC-AAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT-AATGTAT 62 |||| ||||||| ||||||| | | | ||||||||| |||||||||||| || ||| Sbjct 411 TCTAAAAACCAATGAAAATAGAGCAG-AGGTCCTATTCCATTATTCCATGCACAAAATAT 353 Query 63 TCGGGCGTA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || ||| || |||||||||| | ||||||||||| |||| ||||| || |||| Sbjct 352 TCAGGCATATAGCCTGCTTTAAGCACTCTAATTTGTTCAAAGTAAATGTACTGG 299 >seq3589 Length=1146 Score = 80.6 bits (88), Expect = 3e-13 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 7 TAGAAACCAAC-AAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT-AATGTATTC 64 || ||||||| ||||||| | | | ||||||||| ||||||||||| || ||||| Sbjct 455 TAAAAACCAATGAAAATAGAGGAG-AGGTCCTATTCCATTATTCCATGTACAAAATATTC 513 Query 65 GGGCGTA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCT 113 ||| || |||||||||| ||||||||||||| |||| ||||| || || Sbjct 514 AGGCATATAGCCTGCTTTAAACACTCTAATTTGTTCAAAGTAAATGTACT 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595045799862