Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq21045 347 2e-93 seq5744 172 1e-40 seq4167 172 1e-40 >seq21045 Length=2148 Score = 347 bits (384), Expect = 2e-93 Identities = 247/281 (88%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||||||| || || || || ||| | |||||||| Sbjct 2000 GAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAG 1941 Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1940 AGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 1881 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||| ||||||||||||||||||||||||||||| |||||| ||||| | ||||||||| Sbjct 1880 AGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACCTTGGCC 1823 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct 1822 GAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATT 1763 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||||||||||||||||| |||||||||||| ||||||||| Sbjct 1762 GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGC 1722 Score = 91.5 bits (100), Expect = 3e-16 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||||| ||||| | | | || || | || | | | ||| ||||| || |||||| || Sbjct 1690 TCGTGCTTGGGATTGTGGACTGAAACTGTT-CACATGAACCTGGAATTCCCAGTAAGTGC 1632 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||| |||||||||||||||||||||||||||| Sbjct 1631 GTGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 1592 >seq5744 Length=1527 Score = 172 bits (190), Expect = 1e-40 Identities = 174/223 (78%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 1191 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 1249 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| | ||||| || ||| ||||| |||||| |||||| | | || | Sbjct 1250 AATGAAGGTATCAACGTGT---GTTCCTAGGCCGAAAGGTCCGGGTAAACCGCTGAACCA 1306 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 1307 CCTTCGTGCTTGGGATTGTGGACTGAAACTGTT-CACATGAACCTGGAATTCCCAGTAAG 1365 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||| ||| |||||||||||||||||||||||| Sbjct 1366 TGCGTGTCATAAGCTCGCATTGATTACGTCCCTGCCCTTTGTA 1408 >seq4167 Length=1117 Score = 172 bits (190), Expect = 1e-40 Identities = 174/223 (78%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 472 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 530 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| | ||||| || ||| ||||| |||||| |||||| | | || | Sbjct 531 AATGAAGGTATCAACGTGT---GTTCCTAGGCCGAAAGGTCCGGGTAAACCGCTGAACCA 587 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 588 CCTTCGTGCTTGGGATTGTGGACTGAAACTGTT-CACATGAACCTGGAATTCCCAGTAAG 646 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||| ||| |||||||||||||||||||||||| Sbjct 647 TGCGTGTCATAAGCTCGCATTGATTACGTCCCTGCCCTTTGTA 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946946690304