Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoceridae_20sp._20BV-2014_20[genbank_20GCA_5F001014425.1_202015- 05-28] 26,743 sequences; 41,711,596 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3606 385 2e-104 seq7613 365 1e-98 seq2201 196 2e-47 seq9447 134 5e-29 seq18148 107 6e-21 seq15677 98.7 3e-18 seq8817 89.7 2e-15 >seq3606 Length=1094 Score = 385 bits (426), Expect = 2e-104 Identities = 255/282 (90%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| | ||| | ||| | | |||||||||||||||||| Sbjct 816 CTCCCACTTATGCTACACCTCTTATGTCTCCTTACAGTGCCAGACTAGAGTCAAGCTCAA 875 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 876 CAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 935 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 995 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCA-----TAGTTACTCCCGCCGTTTACCCGCG 471 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 996 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTTAGTTACTCCCGCCGCCTACCCGCG 1055 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||| |||| ||||||| |||||||||||||||||||||| Sbjct 1056 CTTGCTTGA---TCTTCACGTTGACATTCAGAGCACTGGGCA 1094 >seq7613 Length=1641 Score = 365 bits (404), Expect = 1e-98 Identities = 207/210 (99%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 224 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 284 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 285 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGA 344 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| ||||||| Sbjct 345 GCACTGGGCAGAAATCACATTGTGTCAACA 374 Score = 174 bits (192), Expect = 5e-41 Identities = 99/101 (98%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 55 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTAGTTAATCC 114 Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||| |||||||||||||||||||||||||||||||||||| Sbjct 115 ATTCCTGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 155 >seq2201 Length=1200 Score = 196 bits (216), Expect = 2e-47 Identities = 138/156 (88%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 ||| ||||||||||||||||| |||| ||||||||||||||| ||| |||||||| || Sbjct 311 GTCAGACTAGAGTCAAGCTCAGCAGGTTCTTCTTTCCCCGCTAATTTTTCCAAGCCCATT 370 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG--TGGGAATCTCGTTAATCCA 392 ||||||||| ||||| ||||||||||||||| |||||| |||||||||||| |||||| Sbjct 371 CCCTTGGCTACGGTTTTGCTAGATAGTAGATAAGGACAGTATGGGAATCTCGTAAATCCA 430 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||||||||||||| ||||||||||||||| Sbjct 431 TTCAT--GCGTCACTAATTATATGACGAGGCATTTG 464 >seq9447 Length=1078 Score = 134 bits (148), Expect = 5e-29 Identities = 94/107 (88%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 || |||||| ||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 458 AAACCCGTTGCCTTGGCCATAATTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 517 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||| ||||||| ||||| ||||||||||||| Sbjct 518 TAATCCATTCATGCGAGTCACTA-----ATGACTAGGCATTTGGCTA 559 >seq18148 Length=2089 Score = 107 bits (118), Expect = 6e-21 Identities = 85/102 (83%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 ||||| ||||| || ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 593 CGTTCATTTGGCAGTAATTTCGCTAGATAGTAGATAGGCACAGTGGGAATCTTGTTAATC 534 Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||| ||| | ||||||||||||||||||| Sbjct 533 CATTCATGCTGTACACCA-----ATGACGAGGCATTTGGCTA 497 >seq15677 Length=2038 Score = 98.7 bits (108), Expect = 3e-18 Identities = 75/89 (84%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTT-----CCCCGCTGATTCCGCCAAGCCCGT 333 |||||||||||||||||||||| |||||||| ||||||| || ||||||||| Sbjct 807 GACTAGAGTCAAGCTCAACAGGTTCTTCTTTTCATTCCCCGCTATTTTTTGCAAGCCCGT 866 Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||| ||||||||||||||||| Sbjct 867 TCCCTTGGCTACGGTTTCGCTAGATAGTA 895 >seq8817 Length=1101 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||| |||| || |||||||||||||||||||||||| ||| |||||| ||||| Sbjct 335 CCCGTTCCTTTGGAAGTAATTTCGCTAGATAGTAGATAGGGACCGTGTGAATCTTGTTAA 276 Query 389 TCCATTCATGCGCGTCA 405 || |||||||| | ||| Sbjct 275 TCAATTCATGCCCTTCA 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634762698464