Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq26376 333 5e-89 seq17894 280 3e-73 seq51445 161 2e-37 seq35907 78.8 2e-12 >seq26376 Length=1812 Score = 333 bits (368), Expect = 5e-89 Identities = 231/262 (88%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1790 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGT 1731 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || |||||||||||||||||||| |||||| ||||||| |||||||||||||||||| Sbjct 1730 AAGCGGGTGAACAATCCAACGCTTGGCGAATTTTGCTTCGCAATGATAGGAAGAGCCGAC 1671 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1670 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1611 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||| ||||||| || ||| | || | |||||||| |||| Sbjct 1610 TGTGGTAACTTTTCTGACACCTCTCGCTGAAAACCCAAAAGGTCAGAAGGATCGTGAGGC 1551 Query 272 CACACTTTCATGGTTTGTATTC 293 | | |||||| ||| ||||||| Sbjct 1550 CCCGCTTTCACGGTCTGTATTC 1529 >seq17894 Length=870 Score = 280 bits (310), Expect = 3e-73 Identities = 194/219 (89%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| |||||||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct 870 TCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTAAGCGGGTGAACAATCCAACGCTT 811 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175 |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 810 GGCGAATTTTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTC 751 Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 750 GCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 691 Query 236 AGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCC 272 || ||| ||| |||| | |||||||| ||||| Sbjct 690 CGCTGAAAACTCTTCAGCGGACGAGAGGATCGAGAGGCC 652 >seq51445 Length=2267 Score = 161 bits (178), Expect = 2e-37 Identities = 112/126 (89%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| |||||||||||||||||||||||||||| | || |||||||||||| ||||||| Sbjct 1 TCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTAAGCGGGTGAACAATCTAACGCTT 60 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA-CGT 174 |||||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||| Sbjct 61 GGCGAATTTTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAACAATCGT 120 Query 175 CGCTAT 180 | ||| Sbjct 121 AGGTAT 126 >seq35907 Length=1799 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 |||| || || |||||||||||||||||||||||||||| | || |||||||||||||| Sbjct 61 AACCACTCCCACGACGGTCTAAACCCAGCTCACGTTCCCTGTAAGCGGGTGAACAATCCA 2 Query 110 A 110 | Sbjct 1 A 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853713182016