Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13914 109 4e-19 seq7792 95.1 1e-14 >seq13914 Length=11729 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||||||||| || || || ||| || ||| | ||||| || ||||| || || ||| Sbjct 8105 TTCAATGCCATTGAAACCATGCCGTGTGTTAAGAGAAAAGCTGACTGGGCGTTGAAGTGG 8046 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | | || || || ||||| ||| || | | || ||||| | ||||| ||| Sbjct 8045 ATAAATGACAAAAACGCGACTTTTGGAGAAAGAATCATAGCTTTTGCTGCTGTCGAAGGT 7986 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || || |||| ||||| || || |||||| | || ||| | || || ||||| Sbjct 7985 ATTTTCTTTTCTGGAAGTTTTGCTGCGATATTTTGGCTTAAAAAAAGGGGCCTAATGCCT 7926 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 || ||||| ||||||||||| || |||||| | ||||| Sbjct 7925 GGACTGACTTTCAGCAATGAATTAATATCAAGAGACGA 7888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || ||| ||||||| || || | || ||||| |||||| ||||||| ||||||||||| Sbjct 7737 GAAATTATTCGTGACGCCGTTATCATTGAACAAGAATTTTTGACTGATGCTTTGCCCGTA 7678 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 || | || || ||||| ||| | ||||| ||||||||||||||| || || | Sbjct 7677 TCGATGATTGGAATGAACAGTGAATTAATGAAAACGTATATTGAATTTGTAGCTGATAGA 7618 Query 61813 CTGTTGGTCGATTT 61826 |||| || || || Sbjct 7617 TTGTTAGTGGAGTT 7604 >seq7792 Length=27931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 |||||| || || | || || || ||||| || ||||||||||| ||||| |||||| Sbjct 19667 TTCATTTCGCACGTTCTTGCATTTTTCGCCGCATCTGACGGTATCGTGAATGAAAATTTA 19608 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 | || || ||| || || || ||| | | || || | | |||||||| || ||| Sbjct 19607 GTCGAGCGCTTCTTTCAAGAAGTTCAAATCCCCGAAGCTAGATTCTTCTACGGATTTCAG 19548 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 || |||| |||||||| || || || ||||||||| | | || || || ||| ||| | Sbjct 19547 ATCACCATAGAGAATGTTCATTCAGAAATGTACAGTTTATTGATAGACACATACGTCAAG 19488 Query 61375 GA 61376 || Sbjct 19487 GA 19486 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || ||| ||||||| || || | |||||||| |||||| |||| || ||||| ||||| Sbjct 19033 GAAATTATTCGTGACGCTGTTGCAATCGAACAAGAATTTTTGACAGAGGCTTTACCCGTA 18974 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 || | || || |||||| | | | ||||| | || ||||||||||| || || | Sbjct 18973 TCGATGATTGGAATGAATAGCGAATTAATGAAGACTTACATTGAATTTGTAGCTGATAGA 18914 Query 61813 CTGTTGGTCGATTTG 61827 ||||||| || ||| Sbjct 18913 TTGTTGGTGGAATTG 18899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397178500891040