Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_011356.1
Length=54896
Score E
Sequences producing significant alignments: (Bits) Value
seq9614 457 3e-124
seq19165 360 7e-95
>seq9614
Length=652
Score = 457 bits (506), Expect = 3e-124
Identities = 306/340 (90%), Gaps = 1/340 (0%)
Strand=Plus/Minus
Query 18609 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 18668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593
Query 18669 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGGGTACCAACAGA 18728
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533
Query 18729 AACTCAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACCGTAAAAACCAT 18788
||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473
Query 18789 TCCTGACATGCTCCTTGAGGCATATGGAAATCAGACCGAGGTAGCCCGAATACTGAACTG 18848
||| ||||||||| |||| |||| ||||||||||| || ||||| || | |||||| ||
Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413
Query 18849 CAATCGTGCCACAGTCAGAAAATACATTGGCGATAAAGAAGGGAAAAAGCACGCCGTCGT 18908
| ||| | || |||||||||||| ||| |||||||| ||||||| ||||||| ||||
Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353
Query 18909 CAATGGCGTCCTTATGGTTCATCGCGGATGGGGT-AAAGA 18947
||| | ||| || |||||||||||||||||| || |||||
Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313
>seq19165
Length=1007
Score = 360 bits (398), Expect = 7e-95
Identities = 226/244 (93%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 4483 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4542
|||| | |||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193
Query 4543 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4602
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133
Query 4603 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 4662
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73
Query 4663 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 4722
|| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13
Query 4723 TGAT 4726
||||
Sbjct 12 TGAT 9
Score = 260 bits (288), Expect = 5e-65
Identities = 176/197 (89%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 4096 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 4155
||||||||| || || |||||||| ||||||| ||| || || |||||||| |||||||
Sbjct 507 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 448
Query 4156 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCG 4215
|||||||||||||||||||||||| |||||||||||||||||| ||||| || || ||||
Sbjct 447 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 388
Query 4216 CAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 4275
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 328
Query 4276 CCAGAAGCGCCAGCGCA 4292
|||| || ||||| ||
Sbjct 327 CCAGCAGTTCCAGCACA 311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175378027022856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |