Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq34896 132 5e-29 seq51931 96.9 4e-18 seq59791 91.5 2e-16 seq21138 87.8 2e-15 >seq34896 Length=2021 Score = 132 bits (146), Expect = 5e-29 Identities = 148/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || |||||||||||| ||||||||||||| |||| |||| ||||||| | || ||| Sbjct 1171 TAACTGAAGCTTAGAGACTTTTCTTGGAAGTATGGTATCAGCCACTTCAC--TGTACAAG 1114 Query 62 -ATAACTCGTCATCAGCTCCCGGCCTT-AGAATCCCGGATTTACCTAAGATTCCAGCCTA 119 | | || | ||| ||| | || | || | ||||||||| |||||||| | ||||| Sbjct 1113 TACAGCTTGATATCGACTCTCAGCATAGAGCACCCCGGATTTGCCTAAGATGCATGCCTA 1054 Query 120 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGC 179 | ||| || |||||||||||||||| |||| | || |||||||||||| |||||| Sbjct 1053 CTGTCTTCCACCTGGACAACCAACGCCAGGCTGACTTAACCTTCTCCGTCCTCTCATCGC 994 Query 180 ATTAACCAGAAGTA 193 |||| |||||||| Sbjct 993 ATTACACAGAAGTA 980 >seq51931 Length=214 Score = 96.9 bits (106), Expect = 4e-18 Identities = 135/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||| ||||||| ||||||| |||||||| ||||| |||| || | | Sbjct 25 TTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT 84 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTA---GAATCCCGGATTTACCTAAGATTCCAGCC 117 | |||||||||| | | | ||| ||| |||||||||||||| |||| || Sbjct 85 GC---CTCGTCATCACGCCTCAGTGTTAACAGAAGTCCGGATTTACCTAAACTTCCCACC 141 Query 118 TACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATC 177 ||| ||||||| |||||||| |||| || | |||||||||||||||| || || Sbjct 142 TACACGCTTAAACCGGGACAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTC 201 Query 178 GCATTAAC 185 ||| |||| Sbjct 202 GCAGTAAC 209 >seq59791 Length=201 Score = 91.5 bits (100), Expect = 2e-16 Identities = 129/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||| ||||||| ||||||| |||||||| ||||| ||||| || | | Sbjct 25 TTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTACTTCAGCACCGTAGT 84 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAA--TCCCGGATTTACCTAAGATTCCAGCCT 118 | |||||||||| | | || ||| || | |||||||||||| | | |||| Sbjct 85 GC---CTCGTCATCACACCTCAGCGTTAAAAGGTACCGGATTTACCTGGAACCTCCGCCT 141 Query 119 ACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCG 178 || ||||||| |||||||| |||| ||| | |||||||||||||||| || ||| Sbjct 142 ACATGCTTAAACCGGGACAACCGTCGCCCGGCTAACATAGCCTTCTCCGTCCCCCCTTCG 201 >seq21138 Length=1833 Score = 87.8 bits (96), Expect = 2e-15 Identities = 132/186 (71%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 ||| ||||||||||| |||||||||||||||| || ||| ||||||| |||| || Sbjct 925 TTAGCTGAAGCTTAGTGGCTTTTCTTGGAAGCAGGGTATCGCTCACTTCG---TCTACAA 869 Query 61 GATAACTCGTCATCAGCTCCCGGCCTT--AGAATCCCGGATTTACCTAAGATTCCAGCCT 118 | ||||||||||| | | | || || | ||||||||| |||||| | | ||| Sbjct 868 GTAGACTCGTCATCATGCCTCAGTGTTAAAGTAGCCCGGATTTGCCTAAGCTACACACCT 809 Query 119 ACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCG 178 || ||||||| | ||||| |||| || ||||||||||||| ||||| Sbjct 808 ACACACTTAAACCAACTCTTCCAACCGTTGGCTGAGGTAACCTTCTCCGTCCCCACATCG 749 Query 179 CATTAA 184 || ||| Sbjct 748 CACTAA 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518095521162