Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq21138 179 5e-43 seq34896 149 9e-34 >seq21138 Length=1833 Score = 179 bits (198), Expect = 5e-43 Identities = 191/249 (77%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| ||||||||||| |||| | || || |||| | || Sbjct 1180 CTTCCAGCACCGGGCAGGCGTCACACCGTATACATCCACTTTC-GTGTTAGCACAGTGCT 1122 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC------CACCAGCTCA 120 |||||||| ||||||||||| ||||| ||||||||| || | | || | | Sbjct 1121 GTGTTTTTGATAAACAGTCGCAGCCCTCATTTCTCTGCGGCCTCATTGGGCTCCGGTTGT 1062 Query 121 ACACGTCGTTCACCAGC-AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 |||| | ||||| | || ||||| ||||||||||||||||||| | || |||||||| Sbjct 1061 ACACCT---TCACCTACTAGAGGCACACCTTCTCCCGAAGTTACGGTGTCAATTTGCCGA 1005 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| || ||||| | | | | |||||| || |||| ||| ||||||||||||| Sbjct 1004 GTTCCTTCTCCCGAGTTCTCTCAAGCACCTTAGAATACTCTTCCTACCCACCTGTGTCGG 945 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 944 TTTGCGGTA 936 >seq34896 Length=2021 Score = 149 bits (164), Expect = 9e-34 Identities = 186/252 (74%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||| ||| || ||||| || |||| | || || ||| Sbjct 1433 TTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1375 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | || |||||||| |||||||| || | || | |||||| | ||| ||||| Sbjct 1374 GTGCTATGTTTTTAATAAACAGTTGCAGCGGCCTGGTTTCTGCGGCTGCCAAGCGCTCAG 1315 Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || ||| ||||| ||| || ||||||||||||||||||| ||||||||| Sbjct 1314 GGAGCAAGTCCCATCACCCTCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 1255 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||| | || ||||| | | | |||||| || | ||| |||||||||||||||| Sbjct 1254 CTAGTTCCTTCAGCAGAGTTCTCTCAAGCGCCTTGGTCTACTCGACCTGACCACCTGTGT 1195 Query 237 CGGTTTACGGTA 248 |||||| |||| Sbjct 1194 CGGTTTCGGGTA 1183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693992148717