Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq34896 253 4e-65 seq21138 242 8e-62 seq50517 176 1e-41 seq41658 165 2e-38 seq33289 113 1e-22 seq33290 104 5e-20 seq59669 100 6e-19 >seq34896 Length=2021 Score = 253 bits (280), Expect = 4e-65 Identities = 232/293 (79%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| | ||||||| ||| || | | ||||||| ||| Sbjct 1621 TACACTGCATCTTCACAGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGCGCCGCC 1562 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1561 ATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1502 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||||||| | | |||||| || | ||||| Sbjct 1501 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTACGCTAAC 1442 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||||||||||||||||| ||| ||||||| || ||| || | Sbjct 1441 CCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTCGTGT 1382 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC 293 | ||||| || ||||||| |||||||| || ||||| | |||||||| Sbjct 1381 TTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGCGGCCTGGTTTCTGCGGC 1329 >seq21138 Length=1833 Score = 242 bits (268), Expect = 8e-62 Identities = 284/385 (74%), Gaps = 38/385 (10%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | ||||||||| |||||| Sbjct 1358 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTT 1299 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1239 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 1238 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 1188 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| | |||||||| ||| || |||||| Sbjct 1187 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCGTATACATCCACTTTCGTGTTAGCAC 1128 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT--ATTCTCTGCGGCCT--------- 295 | ||||||||||| ||||||||||| | ||| ||||||||||||| Sbjct 1127 AGTGCTGTGTTTTTGATAAACAGTCGC--AGCCCTCATTTCTCTGCGGCCTCATTGGGCT 1070 Query 296 ---GTCATAGAC-------------AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 || || || |||||| ||||||||| ||||||||| |||| ||| Sbjct 1069 CCGGTTGTACACCTTCACCTACTAGAGGCACACCTTCTCCCGAAGTTACGGTGTCAATTT 1010 Query 340 GCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||| | ||||||| Sbjct 1009 GCCGAGTTCCTTCTCCCGAGTTCTC 985 >seq50517 Length=242 Score = 176 bits (194), Expect = 1e-41 Identities = 129/148 (87%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | || | ||||||||| |||||| || ||||||| || || Sbjct 146 TACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCC 87 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 86 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 29 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||||||||||||||||||||||||| Sbjct 28 GACCGTTATAGTTACGGCCGCCGTTTAC 1 >seq41658 Length=1052 Score = 165 bits (182), Expect = 2e-38 Identities = 124/144 (86%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGT--GCCCAAATCG 64 |||||||||| | | ||| ||| | |||||| | |||||||| | ||| ||| Sbjct 142 GCATCTTCACAAACACTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTAGGGCCA--TCG 85 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 TTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 25 Query 125 TATAGTTACGGCCGCCGTTTACTG 148 |||||||||||||||||||||||| Sbjct 24 TATAGTTACGGCCGCCGTTTACTG 1 >seq33289 Length=146 Score = 113 bits (124), Expect = 1e-22 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTC 160 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 146 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 87 Query 161 ACTGCTT--CGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGC 218 | |||| || | | ||||| | |||||||||| ||||||||||||||||| Sbjct 86 AGAGCTTCGCGTTACCGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACA 27 Query 219 TCCTATACATCGTCTTGCG 237 | ||||| || ||| || Sbjct 26 CCGTATACGTCCACTTTCG 8 >seq33290 Length=140 Score = 104 bits (114), Expect = 5e-20 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 104 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT 163 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | Sbjct 140 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 81 Query 164 GCTTC-GATTGC-TCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCC 221 ||||| |||| |||| | |||||||||| ||||||||||||||||| | Sbjct 80 GCTTCTCCTTGCGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCG 21 Query 222 TATACATCGTCTTGCG 237 ||||| || ||| || Sbjct 20 TATACGTCCACTTTCG 5 >seq59669 Length=140 Score = 100 bits (110), Expect = 6e-19 Identities = 106/139 (76%), Gaps = 8/139 (6%) Strand=Plus/Plus Query 104 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT 163 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | Sbjct 1 ATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGA 60 Query 164 GCTTCGATTGCTCTAACAGATCCCC-----TTAACCTTCCAGCACCGGGCAGGCGTCAGC 218 ||||| | | | | | |||| |||||||||| ||||||||||||||||| Sbjct 61 GCTTC---TCCCTGAGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACA 117 Query 219 TCCTATACATCGTCTTGCG 237 | ||||| || ||| || Sbjct 118 CCGTATACGTCCACTTTCG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061755877504