Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq37226 450 4e-124 seq52855 376 7e-102 seq37164 185 3e-44 seq55258 145 2e-32 seq55482 131 5e-28 seq48292 125 2e-26 seq37225 113 1e-22 >seq37226 Length=1724 Score = 450 bits (498), Expect = 4e-124 Identities = 385/471 (82%), Gaps = 7/471 (1%) Strand=Plus/Minus Query 29 ATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAA 88 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1724 ATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAA 1665 Query 89 CCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGA--GGTTTCCCCTTCGGGG 146 ||||||| ||||||||| | || | || |||||| || ||| |||||||| Sbjct 1664 CCTTACCTGGTCTTGACATAGTAAGAACTTTCCAGAGATGGATTGGTG---CCTTCGGGA 1608 Query 147 GACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAG 206 || | ||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1607 -ACTTACATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAG 1549 Query 207 TCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA-TTAAGTTGGGCACTCTAAGT 265 |||||||||||||||||||||| |||| |||||| || || | |||| ||| |||| Sbjct 1548 TCCCGCAACGAGCGCAACCCTTTTCCTTATTTGCCAGCACTTTGGGTGGGAACTTTAAGG 1489 Query 266 TGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTAT 325 |||||| ||||||||| ||||||||| |||||||||||||| |||||||| |||||| Sbjct 1488 ATACTGCCAGTGACAAACTGGAGGAAGGCGGGGACGACGTCAAGTCATCATGGCCCTTAC 1429 Query 326 GATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCA 385 || ||||||||||||||||||||||| | ||||||||| || | |||| | Sbjct 1428 GACCAGGGCTACACACGTGCTACAATGGTCGGTACAAAGGGTTGCTACCTAGCGATAGGA 1369 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 || |||| || |||| | || ||| ||||||| |||||||||||||||| |||||| Sbjct 1368 TGCTAATCTCAAAAAGCCGATCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAG 1309 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 ||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 1308 TCGGAATCGCTAGTAATCGCGGATCAGAATGCCGCGGTGAATACGTTCCCG 1258 >seq52855 Length=506 Score = 376 bits (416), Expect = 7e-102 Identities = 290/343 (85%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 155 GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA 214 |||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||| Sbjct 4 GACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAA 63 Query 215 CGAGCGCAACCCTTAAGCTTAGTTGCCATCA-TTAAGTTGGGCACTCTAAGTTGACTGCC 273 ||||||||||||||| ||| ||||||| | || | ||| |||| ||| ||||||| Sbjct 64 CGAGCGCAACCCTTATCCTTTGTTGCCAGCGGTTCGGCCGGGAACTCAAAGGAGACTGCC 123 Query 274 GGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGG 333 |||| |||| ||||||||||||||| |||||||| |||||||| |||||| || | ||| Sbjct 124 AGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAGTAGGG 183 Query 334 CTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATC 393 |||||||||||||||||||| |||||||| | ||||| |||||| ||||| | | Sbjct 184 CTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACC 243 Query 394 CCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATC 453 |||||||| || ||| ||||||| |||||||||||||||| |||||| |||||| Sbjct 244 TCATAAAGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATC 303 Query 454 GCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 304 GCTAGTAATCGTAGATCAGAATGCTACGGTGAATACGTTCCCG 346 >seq37164 Length=175 Score = 185 bits (204), Expect = 3e-44 Identities = 150/179 (84%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 43 GCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTT 102 |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| Sbjct 1 GCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTT 60 Query 103 GACATCCTCTGACCCCTCTAGAGATAGAGGTTT--CCCCTTCGGGGGACAGAGTGACAGG 160 ||||||| | || |||||| | ||| ||||| ||| || | | |||||| Sbjct 61 GACATCCACGGAATTTAGCAGAGAT---GCTTTAGTGCCTTC-GGGAACCGTGAGACAGG 116 Query 161 TGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219 || ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 117 TGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGC 175 >seq55258 Length=148 Score = 145 bits (160), Expect = 2e-32 Identities = 125/152 (82%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 51 GGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCT 110 |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 148 GGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCA 89 Query 111 CTGACCCCTCTAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCAT 168 || | || |||||| || ||| ||||| ||| || | |||||||| ||||| Sbjct 88 GAGAACTTTCCAGAGATGGATTGGT---GCCTTC-GGGAACTCTGAGACAGGTGCTGCAT 33 Query 169 GGTTGTCGTCAGCTCGTGTCGTGAGATGTTGG 200 || |||||||||||||||| |||| ||||||| Sbjct 32 GGCTGTCGTCAGCTCGTGTTGTGAAATGTTGG 1 >seq55482 Length=148 Score = 131 bits (144), Expect = 5e-28 Identities = 122/152 (80%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 51 GGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCT 110 |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 1 GGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCA 60 Query 111 CTGACCCCTCTAGAGATAGAGGTTT--CCCCTTCGGGGGACAGAGTGACAGGTGATGCAT 168 || | |||||| | ||| ||||| ||| || | |||||||| ||||| Sbjct 61 GAGAACTTAGCAGAGAT---GCTTTGGTGCCTTC-GGGAACTCTGAGACAGGTGCTGCAT 116 Query 169 GGTTGTCGTCAGCTCGTGTCGTGAGATGTTGG 200 || |||||||||||||||| |||| ||||||| Sbjct 117 GGCTGTCGTCAGCTCGTGTTGTGAAATGTTGG 148 >seq48292 Length=319 Score = 125 bits (138), Expect = 2e-26 Identities = 77/82 (94%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 238 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 297 Query 61 GTGGTTTAATTCGAAGCAACGC 82 |||||||||||||| ||||||| Sbjct 298 GTGGTTTAATTCGATGCAACGC 319 >seq37225 Length=1400 Score = 113 bits (124), Expect = 1e-22 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 82 TACGGTCGCAAGACTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 23 Query 61 GTGGTTTAATTCGAAGCAACGC 82 |||||||||||||| ||||||| Sbjct 22 GTGGTTTAATTCGATGCAACGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503088139840