Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq34896 205 2e-50 seq51039 168 1e-39 seq41658 168 1e-39 seq21138 168 1e-39 seq48698 163 6e-38 >seq34896 Length=2021 Score = 205 bits (226), Expect = 2e-50 Identities = 176/218 (81%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 1802 GGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 1861 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | |||||| ||| ||||| || ||| | ||| ||||||||||| | | Sbjct 1862 TACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCGTAGAGTATAAAGGCAAAAGCGCGC 1921 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || ||||||| |||| |||||| |||||| |||||||| || |||| |||||||| ||| Sbjct 1922 TTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 1981 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 ||| |||||| |||| |||||| ||||||||||| ||| Sbjct 1982 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTAC 2019 >seq51039 Length=292 Score = 168 bits (186), Expect = 1e-39 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||| | Sbjct 232 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAG 173 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | || | | ||| ||| | || | | ||||||| |||| ||| | Sbjct 172 CACGAAGGTTAGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCTAGC 113 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| | | || |||||| |||||| || | || |||||||| ||| Sbjct 112 TTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTT 53 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 52 CTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 5 >seq41658 Length=1052 Score = 168 bits (186), Expect = 1e-39 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 ||||||||||||||||||||| ||||||||| |||||||||| || | ||| | ||| Sbjct 344 GGCAGTTTGACTGGGGCGGTCTCCTCCCAAATTGTAACGGAGGAGCTCGAAGGTCGCCTA 403 Query 187 AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 | || ||| | | | | | |||| || ||||||||| | || ||||||| ||| Sbjct 404 GGTACGGTCGGACATCGTACTGATAGTGTAATGGCAAAAGGCGGCTTAACTGCGAGACCG 463 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306 |||||| |||||| |||||| || | || |||||||| ||| |||||||||| |||| Sbjct 464 ACAAGTCGAGCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGTTCTGAATGGAAGGGCC 523 Query 307 GTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 524 ATCGCTCAACGGATAAAAGGTACTCCGGGGATA 556 >seq21138 Length=1833 Score = 168 bits (186), Expect = 1e-39 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1544 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGA 1603 Query 171 GCCCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| ||| || || | | | ||| | | || | ||||||| |||| ||| || Sbjct 1604 GTTCGAAGGTACGCT-AGTTACGGTCGGACATCGTGACGATAGTGCAATGGCATAAGCGT 1662 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | || ||||||| || |||||| ||||| |||||| || | || |||||||| || Sbjct 1663 GCTTAACTGCGAGACTGACAAGTCGAGCAGATGCGAAAGCAGGACATAGTGATCCGGTGG 1722 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 1723 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 1772 >seq48698 Length=361 Score = 163 bits (180), Expect = 6e-38 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||||| | ||| |||||||||||||||||| ||||| |||| |||||||||| | Sbjct 232 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGCGTAACGGAGGAG 173 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | || | | || ||| | | || | |||||||||||| ||| | Sbjct 172 CACGAAGGTTAGCTAATCACGGTCGGACATCGTGAGGTTAGTGCAAAGGCATAAGCTAGC 113 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| | | || |||||| |||||| || |||| |||||||| ||| Sbjct 112 TTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCTTAGTGATCCGGTGGTT 53 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 52 CTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981804380704