Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq37225 446 4e-123 seq55102 293 5e-77 seq50610 149 1e-33 seq59757 78.8 2e-12 seq57103 78.8 2e-12 >seq37225 Length=1400 Score = 446 bits (494), Expect = 4e-123 Identities = 323/368 (88%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | ||| ||||||| |||||||||||||| |||||||||||| || | ||| Sbjct 541 CTTTACAACCATAAGGCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGGTTCCCCCC 598 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 599 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 658 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||||||||||||||| | ||| ||||||||||||||| ||| ||||| || Sbjct 659 TGTGGCGGATCATCCTCTCAGACCCGCTACAGATCGTCGCCTTGGTAGGCCTTTACCCCA 718 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||| Sbjct 719 CCAACTAGCTAATCCGACTTAGGCTCATCTATTAGCGCAAGGTCCGAAGATCCCCTGCTT 778 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 |||||||||||||||||||||||||||| ||| |||| || ||| |||||||||| || Sbjct 779 TCTCCCGTAGGACGTATGCGGTATTAGCATCCCTTTCGAAATGTTGTCCCCCACTAATAG 838 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCT-TCTCTCT 359 |||||||||| | ||||||||||||||||||||| | || |||||||| |||||| Sbjct 839 CCAGATTCCTAAGTATTACTCACCCGTCCGCCGCTAAGATCAGTAGCAAGCTACCTCTCT 898 Query 360 ACCGCTCG 367 ||||||| Sbjct 899 -CCGCTCG 905 >seq55102 Length=237 Score = 293 bits (324), Expect = 5e-77 Identities = 196/216 (91%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 215 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 158 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 98 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| || |||||||||||| |||||||||||||| || Sbjct 97 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCATTACCCCA 38 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 || |||||||||||| | || ||| |||||||| || Sbjct 37 CCTACTAGCTAATCCCATCTGGGCACATCTGATGGC 2 >seq50610 Length=159 Score = 149 bits (164), Expect = 1e-33 Identities = 130/159 (82%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGC 238 |||| |||||||||||| | || ||| |||||||| || |||||||||||||||| | Sbjct 159 CACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCATGAGGCCCGAAGGTCCCCCAC 100 Query 239 TTTCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTAC 297 ||| ||| || |||| ||||||||||||| |||||||| |||||||||| | | Sbjct 99 TTTGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCAT 41 Query 298 CAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 ||||||| |||| || ||||||||||||||||||||||| Sbjct 40 CAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCGCTC 2 >seq59757 Length=165 Score = 78.8 bits (86), Expect = 2e-12 Identities = 80/103 (78%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 271 CCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCG 330 |||||||| |||||||||| | | ||||||| |||| || ||||||||||||||||| Sbjct 164 CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCG 105 Query 331 CCGCTCTC---AAGAGAAGCAAGCTTCT---CTCTACCGCTCG 367 |||||| | | || |||||||| || | || ||||||| Sbjct 104 CCGCTCGCCGGCAAAGTAGCAAGCTACTTTCCGCTGCCGCTCG 62 >seq57103 Length=163 Score = 78.8 bits (86), Expect = 2e-12 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 271 CCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCG 330 |||||||| |||||||||| | | ||||||| |||| || ||||||||||||||||| Sbjct 162 CCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCG 103 Query 331 CCGCTC-TCA-AGAGAAGCAAGCT-TCTCT-CTACCGCTCG 367 |||||| ||| || |||||||| || | ||||||||| Sbjct 102 CCGCTCGTCACCCAGGAGCAAGCTCCCTGTGTTACCGCTCG 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071350057120