Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq34896 342 2e-91 seq59799 223 1e-55 seq21138 190 7e-46 seq49542 91.5 5e-16 seq31560 89.7 2e-15 >seq34896 Length=2021 Score = 342 bits (378), Expect = 2e-91 Identities = 423/566 (75%), Gaps = 22/566 (4%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||||||||| ||| | |||||||||| | ||| | | ||| || ||||||| Sbjct 550 GACTACGGACGTTAG-CACCCGCAGTCTGTCTCCCG-GATAGTACTCATAGGTATTCGGA 493 Query 63 GTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCGG 121 ||||| | || |||||| | | | |||||||| | | |||||||||||| || Sbjct 492 GTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCT- 434 Query 122 GAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | | | || ||| || |||||||| ||||||||||||||||||||||| | | Sbjct 433 -ATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCAGG 375 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||| |||||||||||||||||||| |||||||||| |||||||| ||||||| Sbjct 374 CTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAACGACAGTGGGT 315 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||| || |||||| ||||||||||| |||||||||||| | | | || Sbjct 314 TCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCTCATGGATAGATCGCCTGGTTT 255 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | || ||| | |||||||||| |||||| |||| |||||||| ||| Sbjct 254 CGGGTCTATACCCAGCAACT-AAACGCCCTATTAAGACTCGATTTCTCTACGGCTCCCCT 196 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 | | ||||||||| || || || || |||| | | |||| | ||||||| |||| Sbjct 195 ATGC-GGTTAACCTTGCTACTGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCA 138 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | || ||| || ||||| || | ||||| ||| ||||||||| Sbjct 137 GTCACC--GAAC----AAG-----TCGGCTCCCACTGCTTGTATGCATGCGGTTTCAGGA 89 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||||| |||||| |||||||||||||||||| || | ||| Sbjct 88 TCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTA 29 Query 539 TCGGTCACCAAGGAGTATTTAGGCTT 564 ||||||| |||||||||||| ||| Sbjct 28 TCGGTCAGTCAGGAGTATTTAGCCTT 3 >seq59799 Length=293 Score = 223 bits (246), Expect = 1e-55 Identities = 230/296 (78%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 129 CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGG 188 |||| | |||| |||||||| ||||||||||||||||||||| | |||||||||| Sbjct 291 CACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCCCGGTTTGATTGG 234 Query 189 CCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||||||||| | ||||| ||||||| || | |||||||| | ||| |||||||||||| Sbjct 233 CCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTAGTCGGTTCGGTCCTC 174 Query 249 CACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTG 308 || || |||||| ||||||||||||||||| |||||||| | ||||||||| Sbjct 173 CAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTAT 114 Query 309 ATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT 368 | | ||| ||| | |||||| || |||||| |||| || ||||| ||| | || |||| Sbjct 113 ACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCTGCGGCTCCCCTATAC-GGTT 56 Query 369 AACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCAC 424 ||||| || ||| || || |||| | | |||| | ||||||| |||| ||||| Sbjct 55 AACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 1 >seq21138 Length=1833 Score = 190 bits (210), Expect = 7e-46 Identities = 210/271 (77%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97 |||| ||||| ||| |||| ||||||| || ||| |||||| | | | ||||||| Sbjct 269 GCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTT-GGTAAGTCGCGATGACCCCCTA 211 Query 98 GACCATC-CAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTT 155 | |||| ||||||| |||| ||| | || ||| | | | || |||||||| ||| Sbjct 210 G-CCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACT--ACCTAAATAGTTTT 154 Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCC 215 || |||||||||||||| | ||||||| || ||||||||||||||||||||| |||||| Sbjct 153 CGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCC 94 Query 216 CCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275 ||| | ||| |||| | ||||||||||| |||||| || ||||| ||||| ||| Sbjct 93 CCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCT 34 Query 276 GCCCATGGATAGATCACTTCGCTTCGGGTCT 306 | ||||||||||||||||| | ||||||||| Sbjct 33 GGCCATGGATAGATCACTTGGTTTCGGGTCT 3 >seq49542 Length=137 Score = 91.5 bits (100), Expect = 5e-16 Identities = 87/108 (81%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 91 CCCCCTAGACCATCCAGTGCTCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAA 148 |||||||| | | |||||||||||| ||| || ||| |||| | |||| ||||||| Sbjct 106 CCCCCTAGCCGAAACAGTGCTCTACCCCCGAAGATGAATTCACGAGGCGCT--ACCTAAA 49 Query 149 TGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 | ||||||||||||||||||||| | |||||||||||||||||| Sbjct 48 TAGCTTTCGGGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCAC 1 >seq31560 Length=137 Score = 89.7 bits (98), Expect = 2e-15 Identities = 88/110 (80%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 89 GGCCCCCTAGACCATCCAGTGCTCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTA 146 |||||||||| | | |||||||||||| ||| || || |||| | |||| ||||| Sbjct 108 GGCCCCCTAGCCGAAACAGTGCTCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTA 51 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||| ||||||||||||||||||||| | |||||||||||||||||| Sbjct 50 AATAGCTTTCGGGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816498007296