Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq34896 448 1e-123 seq59799 235 1e-59 seq52358 197 3e-48 seq60050 190 5e-46 seq49602 188 2e-45 >seq34896 Length=2021 Score = 448 bits (496), Expect = 1e-123 Identities = 327/366 (89%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || || ||||| ||||| ||| ||||||||||||||||||| Sbjct 356 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCAGTTAG 299 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| |||||||||||| ||||| ||||||||| | Sbjct 298 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCGCCTGGTTT-CGGGTCTATA-C 244 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| |||| |||||||| ||||||||| ||| | ||||| ||||||||| ||||||| Sbjct 243 CCAGCAACTAAACGCCCTATTAAGACTCGATTT-CTCTACGGCTCCCCTATGCGGTTAAC 185 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 184 CTT-GCTACTGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCGAACAA 126 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || ||||||||||||||||| |||| |||||||||||||||||||||||||||| | || Sbjct 125 -GTCGGCTCCCACTGCTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTCACAGG 67 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 66 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 7 Query 364 CCTTGG 369 |||||| Sbjct 6 CCTTGG 1 >seq59799 Length=293 Score = 235 bits (260), Expect = 1e-59 Identities = 196/228 (86%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 219 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 163 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 162 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 107 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||| ||||||| ||| | Sbjct 106 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTGCGGCTCCCCTATACGGTTAACCTT-G 49 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 236 | || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 48 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 1 >seq52358 Length=144 Score = 197 bits (218), Expect = 3e-48 Identities = 133/146 (91%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 169 CCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTAC 228 |||||||||||||| ||| || || ||| ||||||||||||||||||||||||||||||| Sbjct 144 CCCTATTCGGTTAACCTT-GCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTAC 86 Query 229 GCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTT 288 ||||||||| ||||| || ||||||||||||||||||| | ||||||||||| ||| ||| Sbjct 85 GCAGTCACCTAACAA-GTAGGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTT 27 Query 289 CACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||||||| ||||||||||||||| Sbjct 26 CACTCCCCTCGCCGGGGTTCTTTTCG 1 >seq60050 Length=147 Score = 190 bits (210), Expect = 5e-46 Identities = 133/149 (89%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 168 CCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTA 227 ||||||| ||||||| ||| || || ||| |||||||||||||||||||||||||||||| Sbjct 1 CCCCTATACGGTTAACCTT-GCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTA 59 Query 228 CGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATT 287 ||||||||| | |||| | | |||||||||||||||||| | ||||||||||| ||| || Sbjct 60 CGCAGTCACACCACAAGG-GTGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTT 118 Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 ||||||||||| ||||||||||||||||| Sbjct 119 TCACTCCCCTCGCCGGGGTTCTTTTCGCC 147 >seq49602 Length=145 Score = 188 bits (208), Expect = 2e-45 Identities = 130/146 (89%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 169 CCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTAC 228 |||||| ||||||| ||| || || ||| ||||||||||||||||||||||||||||||| Sbjct 145 CCCTATACGGTTAACCTT-GCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTAC 87 Query 229 GCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTT 288 |||||||||| | ||| ||||||||||||||||||| | ||||||||||| ||| ||| Sbjct 86 GCAGTCACCCCATAAAAGAGGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTGTTT 27 Query 289 CACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||||||| ||||||||||||||| Sbjct 26 CACTCCCCTCGCCGGGGTTCTTTTCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240847230336