Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq34896 210 5e-52 seq21138 170 5e-40 seq50171 158 3e-36 seq49274 87.8 4e-15 >seq34896 Length=2021 Score = 210 bits (232), Expect = 5e-52 Identities = 295/406 (73%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 955 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 896 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||||| |||||| ||||| || ||||||| || |||||| | | Sbjct 895 CTGGAACCCTTGGTCTTTCGGCGAACGGGTTTTTCACCCGTTTTGTCGTTACTCACGTCA 836 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | || | || ||||| | || ||| Sbjct 835 GCATTCGCACTTCTGAT-ACCTCCAGCATGCT-TCTCAACACACCTTCATCGGCTTACAG 778 Query 178 GACGCTCCCCTACCCAACCACAC--AGGTTGC---CACAGCTTCGGCGGATAACTTAAGC 232 ||||||||||||| || | | ||| | | |||||||||| ||| || ||| Sbjct 777 AACGCTCCCCTACCACGTAACTCTAAAGTTACATCCGCAGCTTCGGCACATAGTTTTAGC 718 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 717 CCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 658 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | Sbjct 657 GTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACATCGTTTCCCACTTA 598 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||||||||||||| | ||||| ||||| ||||| Sbjct 597 ACTATGATTTTGGGGCCTTAGCTGGCGGTCTGGATTGTTTTCCTCT 552 >seq21138 Length=1833 Score = 170 bits (188), Expect = 5e-40 Identities = 288/406 (71%), Gaps = 11/406 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| ||||||||||| | || || ||| | | Sbjct 709 CGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCG 650 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||||| | |||| | ||| || ||||| | ||||||||||| | Sbjct 649 CAGGAAACCTTGGGTTTTCGGTGAGGGGGCTTTTCACCCCCTTTATCGCTACTCATGTCA 590 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | || | | || |||||| || ||| Sbjct 589 GCATTCGCACTTCTGAT-ACCTCCAGCATCCT-TCTCAAGACACCTTCACAGGCTTACAG 532 Query 178 GACGCTCCCCTACCCAACC-ACACAGG---TTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| | ||| | | || | |||||| || || |||| Sbjct 531 AACGCTCCTCTACCATATGTACATCGTACATATCCGCGTCTTCGGTTATCAATTTGAGCC 472 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| ||||||||||||||||||| ||||| || || Sbjct 471 CCGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGA 412 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||| |||||| |||||| || |||| || ||| ||||| | Sbjct 411 TGGCTGCTTCTAAGCCAACATCCTGGCTGTCTATGCCTTCCCACCTCGTTTTCCACTTAA 352 Query 354 TC-ACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || || ||| |||||| | | |||||| ||||||||||| Sbjct 351 TTGATCATTT-GGGACCTTAGACGGCGGTCTGGGTTGTTTCCCTCT 307 >seq50171 Length=329 Score = 158 bits (174), Expect = 3e-36 Identities = 152/194 (78%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 205 TGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGAC 264 |||| ||||||||| | | | ||| |||||| ||||| || |||| | ||| ||| Sbjct 319 TGCCGCAGCTTCGGTGCACAGTTTA-GCCCCGTTACATCTTCCGCGCAGGCCGACTCGAC 261 Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||||||| ||||| || |||||||||||| |||||||| |||||| |||| Sbjct 260 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTC 201 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 | || ||||||| ||||||||| | || |||| ||| ||||||||| | |||| Sbjct 200 TGTGCCTTCCCACATCGTTTCCCACTTAACCATGACTTTGGGACCTTAGCTGGCGGTCTG 141 Query 385 GGCTGTTTCCCTCT 398 || ||||||||||| Sbjct 140 GGTTGTTTCCCTCT 127 >seq49274 Length=255 Score = 87.8 bits (96), Expect = 4e-15 Identities = 170/245 (69%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 16 GCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGAT 75 ||||||||||||| |||||||||| | | || ||| | | ||||||||||| Sbjct 255 GCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTC 196 Query 76 AATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCAC-TCGC 133 ||||| |||| || |||||| | || |||| ||| | |||||| ||| || Sbjct 195 TTCCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTTATGTCAGCATTCGCACTTCTG 136 Query 134 ATCAACTCCACCACACAGTCACCCGGCAGCTTC-ACCACTGACACGACGCTCCCCTACCC 192 || | ||||| || || |||| | || |||| || || ||| |||||||||||||| Sbjct 135 AT-ACCTCCAGCA-ACCCTCACAGGCCACCTTCAACGGCTTACAGAACGCTCCCCTACCC 78 Query 193 AACCACACA------GGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATC 246 ||| ||||| | |||| ||||||||| | | || ||||||| ||||| || Sbjct 77 AACAACACATAGTGTCGCTGCCGCAGCTTCGGTGCACTGGTTTAGCCCCGTTACATCTTC 18 Query 247 GGCGC 251 |||| Sbjct 17 CGCGC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176886032896