Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq37225 187 4e-45 seq57402 140 5e-31 seq51550 136 7e-30 seq51724 129 1e-27 seq48292 113 7e-23 >seq37225 Length=1400 Score = 187 bits (206), Expect = 4e-45 Identities = 213/284 (75%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||||||||||| | |||| | |||||||||| ||| | Sbjct 198 CCCATGCTTTCGTACCTCAGCGTCAGTGTTAGGCCAGATGGCTGCCTTCGCCATCGGTAT 257 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTC--CGATTGCCTCTCCAGC 118 |||||| || |||||||||||||||||||||| ||||||| | || ||||||| | Sbjct 258 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCAT--CCTCTCCCAC 315 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 |||| || || |||| || |||||| ||| ||| | | ||||||||| || Sbjct 316 ACTCTAGCTAACCAGTATCGAATGCAATTCCCAAGTTAAGCTCGGGGATTTCACATCCGA 375 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 || | |||||||| | | |||||| |||| |||||||| ||||||| || ||| Sbjct 376 CTCAATTAGCCGCCTACGCACGCTTTACGCCCAGTAAATCCGATTAACGCTCGCACCCTC 435 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| |||||||| Sbjct 436 TGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 479 >seq57402 Length=196 Score = 140 bits (154), Expect = 5e-31 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 56 GGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCC 115 ||| ||||||| || |||||||||||||||||||||| ||||||| ||||| | Sbjct 2 GGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTAC 61 Query 116 AGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATC 175 | ||||||| ||||||||||||||| |||||||||| | ||||||||| Sbjct 62 AAGACTCAAGCTTGCCAGTTTCAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATC 121 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 |||||| | |||||| | || |||||| |||| ||| |||| |||||||||| | Sbjct 122 TGACTTAACAAACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACC 181 Query 236 CTACGTATTACCGCG 250 || |||||||||||| Sbjct 182 CTCCGTATTACCGCG 196 >seq51550 Length=196 Score = 136 bits (150), Expect = 7e-30 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| || |||||||||||||||||||||| ||||||| ||||| || | Sbjct 195 TTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGA 136 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || ||||||| ||||||| |||||||||| | ||||||||| ||| Sbjct 135 CTCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGAC 76 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 ||| | |||||| | || |||||| |||| ||| |||| |||||||||| ||| | Sbjct 75 TTGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCC 16 Query 240 GTATTACCGCGGCTG 254 ||||||||||||||| Sbjct 15 GTATTACCGCGGCTG 1 >seq51724 Length=192 Score = 129 bits (142), Expect = 1e-27 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| || |||||||||||||||||||||| ||||||| ||||| || | Sbjct 191 TTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGA 132 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || ||||||| ||||||| |||||||||| | ||||||||| ||| Sbjct 131 CTCTAGCTTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGAC 72 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 ||| | |||||| | || |||||| |||| ||| |||| |||||||||| ||| | Sbjct 71 TTGACAAACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCC 12 Query 240 GTATTACCGCG 250 ||||||||||| Sbjct 11 GTATTACCGCG 1 >seq48292 Length=319 Score = 113 bits (124), Expect = 7e-23 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| | Sbjct 122 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 63 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTC 102 |||||| || |||||||||||||||||||||| ||||||| Sbjct 62 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828313209759