Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq41658 181 7e-44 seq21138 176 3e-42 seq51039 161 7e-38 seq48698 161 7e-38 seq34896 136 3e-30 >seq41658 Length=1052 Score = 181 bits (200), Expect = 7e-44 Identities = 124/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| Sbjct 545 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTG 486 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| | ||||||| | |||| ||||||||||| |||||| Sbjct 485 CTTTCGCACCTGCTCGACTTGTCGGTCTCGCAGTTAAGCCGCCTTTTGCCATTACACTAT 426 Query 121 CACTACGATTTCCGACCGTA 140 || |||||| |||||||||| Sbjct 425 CAGTACGATGTCCGACCGTA 406 >seq21138 Length=1833 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| Sbjct 1761 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTG 1702 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||||||||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 1701 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 1642 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 1641 CGTCACGATGTCCGACCGTA 1622 >seq51039 Length=292 Score = 161 bits (178), Expect = 7e-38 Identities = 120/138 (87%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 16 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTG 75 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| || || |||||||| |||||| ||| ||||||||||||| Sbjct 76 CTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAA 135 Query 121 CACTAC-GATTTCCGACC 137 | || | ||| ||||||| Sbjct 136 C-CTCCTGATGTCCGACC 152 >seq48698 Length=361 Score = 161 bits (178), Expect = 7e-38 Identities = 119/139 (86%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| Sbjct 16 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTAAGACCTG 75 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| || || |||||||| |||||| ||| |||| |||||||| Sbjct 76 CTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTGCACTAA 135 Query 121 CACTACGATTTCCGACCGT 139 | ||||| ||||||||| Sbjct 136 CCTCACGATGTCCGACCGT 154 >seq34896 Length=2021 Score = 136 bits (150), Expect = 3e-30 Identities = 115/141 (82%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 2018 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 1959 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||| | |||||||| || ||| Sbjct 1958 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 1901 Query 121 CACTACG----ATTTCCGACC 137 ||||| |||||||||| Sbjct 1900 --CTACGCGTGATTTCCGACC 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351799924300