Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq48698 264 1e-68 seq51039 255 6e-66 seq21138 201 1e-49 seq41658 187 2e-45 seq34896 141 9e-32 >seq48698 Length=361 Score = 264 bits (292), Expect = 1e-68 Identities = 152/156 (97%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 28 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTAAGACCTGCTTTCGCACCTG 87 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 88 CTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTGCACTAACCTCACGATGTC 147 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||||||||||| |||||||||||||||||||| Sbjct 148 CGACCGTGATTAGCTAACCTTCGTGCTCCTCCGTTA 183 >seq51039 Length=292 Score = 255 bits (282), Expect = 6e-66 Identities = 150/156 (96%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 87 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 88 CTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCCTGATGTC 147 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| |||||||| |||||||||||||||||||| Sbjct 148 CGACCAGGATTAGCTAACCTTCGTGCTCCTCCGTTA 183 >seq21138 Length=1833 Score = 201 bits (222), Expect = 1e-49 Identities = 138/156 (88%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| Sbjct 1749 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTGCTTTCGCATCTG 1690 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||| |||| |||||||||||||||||| | |||||||||| Sbjct 1689 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTC 1630 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | |||| ||||||| ||||||||||| Sbjct 1629 CGACCGTAACTAGCGTACCTTCGAACTCCTCCGTTA 1594 >seq41658 Length=1052 Score = 187 bits (206), Expect = 2e-45 Identities = 135/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 533 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTG 474 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||| ||||| ||| ||||||| ||||| | |||||||| Sbjct 473 CTCGACTTGTCGGTCTCGCAGTTAAGCCGCCTTTTGCCATTACACTATCAGTACGATGTC 414 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| ||| |||||||| |||||||||||| Sbjct 413 CGACCGTACCTAGGCGACCTTCGAGCTCCTCCGTTA 378 >seq34896 Length=2021 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 2006 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 1947 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 1946 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 1887 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 1886 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 1851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473321834148