Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq37225 284 4e-74 seq55102 235 2e-59 seq60010 82.4 2e-13 seq57402 78.8 3e-12 seq60542 77.0 1e-11 seq51550 77.0 1e-11 >seq37225 Length=1400 Score = 284 bits (314), Expect = 4e-74 Identities = 279/364 (77%), Gaps = 27/364 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||| | ||| Sbjct 736 GTCGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCTGTAGCGGGTCTG 677 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||| Sbjct 676 AGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAG 617 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| |||||||| || |||||| |||| | |||||||| | || ||||| Sbjct 616 TGGGGAATATTGGACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 557 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA------------TAAT---------- 380 |||| ||| ||||||| || | | |||| || |||| Sbjct 556 CCTTATGGTTGTAAAGCACTTTAAGCGAGGAGGAGGGTACTGGTATTAATACTACCAGGT 497 Query 381 ----GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 |||| |||| | || |||| |||||||||| |||||||||||||||||||||| Sbjct 496 ACTGGACGTTACTCGCAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATAC 437 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496 |||| || ||||||| |||| ||||| |||||||||| ||||||||| || | || Sbjct 436 AGAGGGTGCGAGCGTTAATCGGATTTACT-GGGCGTAAAGCGTGCGTAGGCGGCTAATTG 378 Query 497 AGTC 500 |||| Sbjct 377 AGTC 374 >seq55102 Length=237 Score = 235 bits (260), Expect = 2e-59 Identities = 178/210 (85%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| ||| ||||| |||| ||| ||||||||||| |||| | ||||||| Sbjct 24 GATTAGCTAGTAGGTGGGGTAATGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 83 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 84 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 143 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||||||||||||| |||||||||||||| | |||||||| || ||||||||| Sbjct 144 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 203 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGA 376 ||||| |||||| || || | |||| || Sbjct 204 CGGGTTGTAAAGTACTTTCAGCGAGGAGGA 233 >seq60010 Length=157 Score = 82.4 bits (90), Expect = 2e-13 Identities = 108/155 (70%), Gaps = 25/155 (16%) Strand=Plus/Plus Query 313 GATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGG 372 |||||||| | |||||||| || |||||||||||||| |||||| || || | ||| Sbjct 1 GATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGAGG 60 Query 373 AAGA---------------TAA----------TGACGGTACTTGAGGAGGAAGCCCCGGC 407 | || ||| ||||| |||| | || ||||| ||||| Sbjct 61 AGGAAGGCGTTAAGGTTAATAACCTTAGCGATTGACGTTACTCGCAGAAGAAGCACCGGC 120 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442 ||||| |||||||||||||||||||||||| |||| Sbjct 121 TAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGG 155 >seq57402 Length=196 Score = 78.8 bits (86), Expect = 3e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 |||||||||||| |||| || ||||||| |||||||||| |||||||||| | || || Sbjct 196 CGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAG 138 Query 486 GTGGTTTCTTAAGTC 500 | ||||| ||||||| Sbjct 137 GCGGTTTGTTAAGTC 123 >seq60542 Length=151 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||||| |||| | || ||||| |||||||||| |||||||||||||||||||||||| | Sbjct 62 TGACGTTACTCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGA 3 Query 440 GG 441 || Sbjct 2 GG 1 >seq51550 Length=196 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481 |||||||||||||||| |||| || ||||||| |||||||||| |||||||||| | | Sbjct 1 CAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCAC 59 Query 482 GTAGGTGGTTTCTTAAGTC 500 | ||| ||| | | ||||| Sbjct 60 GCAGGCGGTCTGTCAAGTC 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496692020096