Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq37225 315 2e-83 seq48292 196 1e-47 seq57402 167 6e-39 seq51550 163 7e-38 seq51724 156 1e-35 >seq37225 Length=1400 Score = 315 bits (348), Expect = 2e-83 Identities = 308/396 (78%), Gaps = 1/396 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 475 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCG 416 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||||||||||||||| ||||||||| || | || |||| || |||||| | | Sbjct 415 GATTTACTGGGCGTAAAGCGTGCGTAGGCGGCTAATTGAGTCGGATGTGAAATCCCCGAG 356 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| || | ||| || || |||| ||||||||| |||| || || |||| Sbjct 355 CTTAACTTGGGAATTGCATTCGATACTGGTTAGCTAGAGTGTGGGAGAGGATGGTAGAAT 296 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| |||||||||||||||||||||| || ||||||| ||| |||||||||| || Sbjct 295 TCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGATGGCGAAGGCAGCCA 236 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| || |||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct 235 TCTGGCCTAACACTGACGCTGAGGTACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 176 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||| ||||||||||||| |||||| || || | || | | ||| Sbjct 175 TGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGTCTCTTTGAGGGAT-TAGTGG 117 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| ||||||| || ||||||||||| Sbjct 116 CGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 81 >seq48292 Length=319 Score = 196 bits (216), Expect = 1e-47 Identities = 178/223 (80%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 || ||||||| |||||||||||||||||||||| || ||||||| ||| ||||||||| Sbjct 18 GTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAG 77 Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 ||||| |||||| |||||| || ||| ||||||||||||||||||||||||||| Sbjct 78 GCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTA 137 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCT 365 ||||||||||||||||||||||||||||||| ||| || | | || | | || || Sbjct 138 GATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAG-GCG 196 Query 366 CCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| ||| ||||| ||||| || ||||||||||| Sbjct 197 TGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTA 239 >seq57402 Length=196 Score = 167 bits (184), Expect = 6e-39 Identities = 154/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 41 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 |||||||||||| |||| || ||||||| |||||||||||||||||||| | || ||| Sbjct 196 CGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG 137 Query 101 TGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTG 160 ||||| |||||||||| |||||| | ||||||||| || ||||| |||||||||| Sbjct 136 CGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTTGAAACTG 77 Query 161 CAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAT 220 ||| |||| | || || || ||||||| |||||||||||||||||||||| Sbjct 76 GCAAGCTTGAGTCTTGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAG 17 Query 221 ATTAGGAGGAACACC 235 || ||||||| ||| Sbjct 16 ATCTGGAGGAATACC 2 >seq51550 Length=196 Score = 163 bits (180), Expect = 7e-38 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 |||||||||||||||| |||| || ||||||| |||||||||||||||||||| | || Sbjct 1 CAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACG 60 Query 97 TAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA 156 ||| ||| | | ||||| || |||||| | ||||||||| || ||||| || ||| Sbjct 61 CAGGCGGTCTGTCAAGTCGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAA 120 Query 157 ACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGT 216 |||| ||||||||| | || || || ||||||| ||||||||||||||||||| Sbjct 121 ACTGGCAGGCTAGAGTCTTGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGT 180 Query 217 AGATATTAGGAGGAA 231 ||| || ||||||| Sbjct 181 AGAGATCTGGAGGAA 195 >seq51724 Length=192 Score = 156 bits (172), Expect = 1e-35 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 41 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 |||||||||||| |||| || ||||||| |||||||||||||||||||| | || ||| Sbjct 1 CGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGG 60 Query 101 TGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTG 160 ||||| | ||||| || |||||| | ||||||||| || ||||| || ||||||| Sbjct 61 CGGTTTGTCAAGTCGGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTG 120 Query 161 CAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAT 220 |||||||| | || || || ||||||| |||||||||||||||||||||| Sbjct 121 GCAAGCTAGAGTCTTGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAG 180 Query 221 ATTAGGAGGAA 231 || ||||||| Sbjct 181 ATCTGGAGGAA 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202470511872