Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq37226 185 2e-44 seq47820 141 2e-31 seq46479 138 2e-30 seq30786 87.8 3e-15 >seq37226 Length=1724 Score = 185 bits (204), Expect = 2e-44 Identities = 239/325 (74%), Gaps = 9/325 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||| | | |||||| ||| ||||| |||| ||||| | Sbjct 373 AGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGAAGAAAGACGTGATAGCCTGCGAAA 314 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | | |||||||| |||| || |||||||| ||||| | Sbjct 313 AGCTCCGGGGAGGCGGCAAATATCCATTGATCCGGAGATGTCTGAATGGGGGAACCCACC 254 Query 121 C-CTTTGGGTCAT---TGCATG-CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACT 175 || | | | | || |||||||||||||| ||||||||| || ||| | Sbjct 253 TACTATAAGGTAGGTATCAATAACTGAATACATAGGTTATTGAAGCGAACGAGGGGAAGT 194 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 ||||||||| |||| | ||||||||||||||| ||||||||| ||||| ||||||| Sbjct 193 GAAACATCTCAGTACCCTTAGGAAAAGAAATCAATTGAGATTCCCTTAGTAGCGGCGAGC 134 Query 236 GAAATGGGATGAG-CCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGG 294 ||| ||||| || || ||| | ||| || | ||| |||| |||||| || | Sbjct 133 GAACGGGGATCAGCCCATTAAGTGATGTGTG---TTTTAGCGGAACGCTCTGGGAAGTGC 77 Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319 || ||| ||||||||| |||||| Sbjct 76 GACCGTAGAGGGTGATAGTCCCGTA 52 >seq47820 Length=228 Score = 141 bits (156), Expect = 2e-31 Identities = 169/225 (75%), Gaps = 16/225 (7%) Strand=Plus/Minus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| |||||||||| |||| | | |||||||||||||||| || |||||||||| Sbjct 223 ACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT 164 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||| ||| | | | | |||||| ||| ||||||||||||||||||||| | || Sbjct 163 CGGCGAG-GTGATATGAACCTTTGACCCGGCGATTTCCGAATGGGGAAACCCAGTGTGTT 105 Query 126 GGG--------TCATTGCATGCTGAATACATAG-GT-ATGCAAAGCGAACGCGGCGAACT 175 | ||||| |||| ||||||||| || ||| | |||||| || ||||| Sbjct 104 TCGACACATTATCATTACATG---AATACATAGTGTAATG--AGGCGAACCGGGGGAACT 50 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 |||||||||||||| | |||||||||||||||||||||||||| Sbjct 49 GAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCC 5 >seq46479 Length=407 Score = 138 bits (152), Expect = 2e-30 Identities = 165/223 (74%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| |||||||||| |||| | | |||||||||||||||| || ||||| |||| Sbjct 185 ACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAAAAGCGC 244 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||| ||| | | | | |||||| ||| ||| ||||||||||||||||| | | | Sbjct 245 CGGCGAG-GTGATATGAACCTTTGACCCGGCGATGTCCGAATGGGGAAACCCAGTGCAAT 303 Query 126 GGGTCATTGCATG--------CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 || ||||| |||||||||||||| | | |||||| || ||||||| Sbjct 304 ---TCGTTGCACTATCGTTAACTGAATACATAGGTTAACGAGGCGAACCGGGGGAACTGA 360 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 |||||||||||| | |||||||||||||||||||||||||| Sbjct 361 AACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCC 403 >seq30786 Length=230 Score = 87.8 bits (96), Expect = 3e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 |||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1 AACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGA 60 Query 238 AATGGGATGAGCC 250 | |||| ||||| Sbjct 61 ACGGGGAGGAGCC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917843183264