Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq41658 349 1e-93 seq34896 333 9e-89 seq21138 316 7e-84 seq50517 206 9e-51 seq48698 156 1e-35 seq51039 143 9e-32 seq33289 91.5 5e-16 >seq41658 Length=1052 Score = 349 bits (386), Expect = 1e-93 Identities = 365/475 (77%), Gaps = 6/475 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACT--CACCACCTGATTG 58 ||||||||| |||||||||| |||| |||| ||| ||||||| || || ||| Sbjct 472 TCGACTTGTCGGTCTCGCAGTTAAGCCGCCTTTTGCCATTACACTATCAGTAC--GATGT 415 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 || ||| | ||| ||||| | || ||||||||||| ||||||||| | ||||||| Sbjct 414 CCGACCGTACCTAGGCGACCTTCGAGCTCCTCCGTTACAATTTGGGAGGAGA-CCGCCCC 356 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 ||| ||||| || |||| |||| |||||| | || ||| | || ||||||||||| | Sbjct 355 AGTCAAACTGCCTACCATGCACGGTCCCCGATCCGGATAACGGACCAAGGTTAGAACCTC 296 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | |||||| |||||||||||| ||| |||||| |||||||| | || ||| | Sbjct 295 AAAGGGGTCAGGGTGGTATTTCAAGGACGGCTCCACTGAAACTAGCGTTCCAGCTTCAAA 236 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | ||||||||||||||||||||||| | | || ||||| | |||||| ||| ||||| Sbjct 235 GCCTCCCACCTATCCTACACAAACCACTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTT 176 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| || ||| | | ||||||| || ||| ||| ||| | Sbjct 175 CACGGGGTCTTTCCGTCTAGCAGCGGGGAGATTGCATCTTCACAAACACTTCAACTTCGC 116 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || || ||||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 115 TGAGTCTCGGGAGGAGACAGTAGGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTAC 56 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 55 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTG 1 >seq34896 Length=2021 Score = 333 bits (368), Expect = 9e-89 Identities = 415/566 (73%), Gaps = 16/566 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| || Sbjct 1945 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 1886 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 1885 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 1827 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||||||| || |||| | ||| ||| | ||| || |||||| || | Sbjct 1826 TCAAACTACCCACCAGACATGGTCCTCGCCCCGGATTACGGGGCAGAGTTAGAA--CCTC 1769 Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | ||| |||||||||||| | | ||||| ||| |||| | | ||||| Sbjct 1768 AACATTACCAGGGTGGTATTTCAAGGATGGCTCCAATGTAACTGGCGTCACATCTTCATA 1709 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | |||||||||||||||||||| | || |||| |||||| ||| ||||| Sbjct 1708 GCCTCCCACCTATCCTACACAAGTAAGGTCAAAGTTCAATGTCAAGCTGCAGTAAAGGTT 1649 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| |||||| | | ||||||| || | | | ||||||| Sbjct 1648 CACGGGGTCTTTCCGTCTAGCCGCGGGTACACTGCATCTTCACAGCGATTTCGATTTCAC 1589 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | |||| || | |||||||| | || ||| ||||||||||||||||||||||||| Sbjct 1588 TGAGCCTCTGCTGGAGACAGCGCCGCCATCATTATGCCATTCGTGCAGGTCGGAACTTAC 1529 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1528 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCT 1469 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 || || | || || | || ||| || | ||||||||||||||| Sbjct 1468 TCGATCAAGAGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCAGCAC 1419 Query 538 CGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||| ||| || ||||| || Sbjct 1418 CGGGCAGGCATCACACCCTATACGTC 1393 >seq21138 Length=1833 Score = 316 bits (350), Expect = 7e-84 Identities = 414/567 (73%), Gaps = 27/567 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||||||||| |||| | ||| ||| || |||| | | ||| || Sbjct 1688 TCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTCC 1629 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| || | ||||| | | |||||||||| ||||||||| | ||||||||| Sbjct 1628 GACCGTAACTAGCGTACCTTCGAACTCCTCCGTTACGCTTTGGGAGGAGA-CCGCCCCAG 1570 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TCCA 179 | ||||| || |||| ||||||||||| | |||||| |||| || |||||||| || | Sbjct 1569 TCAAACTGCCTACCATGCACTGTCCCCGATCCAGATAATGGACCTAGGTTAGAACCTCAA 1510 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA--TCAT 237 || ||| ||||||||||||| | ||||| |||||| ||||| ||| Sbjct 1509 ACACAC-CAGGGTGGTATTTCAACGTTGGCTCCATGCGATCTAGCGA--CCGCACTTCAA 1453 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || ||||||||||||||||||| | | | || ||||||| |||||| ||| ||||| Sbjct 1452 AGCCTCCCACCTATCCTACACAGATCTGTTCAAAGTCCAATACAAAGCTACAGTAAAGGT 1393 Query 298 CCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | ||||||||| |||| | ||||| | | ||||| | || | | ||| ||| Sbjct 1392 TCATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCG 1333 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | | | || || ||||||| || ||||||||||||||||||||||||||||||| Sbjct 1332 CTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTA 1273 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | Sbjct 1272 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGAC 1213 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 |||||| | | || ||| ||| ||| |||| ||||||||| Sbjct 1212 TTCAATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGCA 1172 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| |||||||| || Sbjct 1171 CCGGGCAGGCGTCACACCGTATACATC 1145 >seq50517 Length=242 Score = 206 bits (228), Expect = 9e-51 Identities = 195/244 (80%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 230 CGCATCATAGTCTCCCACCTATCCTACACAA-ACCGCACCGAATGC-CAATACCAAGCTA 287 ||| ||| || ||||||||||||||||||| | || | |||| || | ||||||| Sbjct 242 CGCTTCAAAGCCTCCCACCTATCCTACACATCAAGGCTC--AATGTTCAGTGTCAAGCTA 185 Query 288 TAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTAC 346 |||| ||||| | |||||||||| |||| ||||||| | | ||||||| || | Sbjct 184 TAGTAAAGGTTCACGGGGTCTTTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAG 125 Query 347 TGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGG 406 | ||||||||| | | || ||| |||||||| || || |||||||||||||||||| Sbjct 124 TTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG 65 Query 407 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGT 466 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 64 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGT 5 Query 467 TTAC 470 |||| Sbjct 4 TTAC 1 >seq48698 Length=361 Score = 156 bits (172), Expect = 1e-35 Identities = 187/249 (75%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | || Sbjct 101 TCTCGCAGTCAAGCTAGCTTATGCCTTTGCACTAACCTCACGATGTCCGACCGTGATTAG 160 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 |||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 161 CTAACCTTCGTGCTCCTCCGTTACGCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 219 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAG-ATATCCACTACGGT-CAGA 190 |||| |||||||| |||||| ||||| ||| | | ||||| | ||| | || | || Sbjct 220 CCAGACACTGTCCGCAACCCGGATCACGGGTCTACGTTAGAACATCAA--ACATTAAAGG 277 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 |||||||||||| | |||||| ||| |||| ||| ||| || |||||||||| Sbjct 278 GTGGTATTTCAAGGTTGGCTCCACGCAGACTGGCGTCCACGCTTCAAAGCCTCCCACCTA 337 Query 251 TCCTACACA 259 ||||||||| Sbjct 338 TCCTACACA 346 >seq51039 Length=292 Score = 143 bits (158), Expect = 9e-32 Identities = 129/161 (80%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||||||||||||||| ||| ||| || |||| ||| |||||| || |||||| | || Sbjct 101 TCTCGCAGTCAAGCTAGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAG 160 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 |||||| | || |||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 161 CTAACCTTCGTGCTCCTCCGTTACTCTTTGGGA-GGAGACCGCCCCAGTCAAACTACCCA 219 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGA 173 |||| |||||||| |||||| ||| | ||| | | |||||| Sbjct 220 CCAGACACTGTCCGCAACCCGGATTACGGGTCTACGTTAGA 260 >seq33289 Length=146 Score = 91.5 bits (100), Expect = 5e-16 Identities = 104/140 (74%), Gaps = 10/140 (7%) Strand=Plus/Minus Query 425 GGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTA 484 |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || | Sbjct 146 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 87 Query 485 CCCGCCTCAC-ACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCA 543 || || | ||| ||| || | |||||||||| |||||||||| Sbjct 86 AGAGCTTCGCGTTACC---------GCTAACCCCATCAATTAACCTTCCGGCACCGGGCA 36 Query 544 GGCGTCAGTCCGTATACCTC 563 ||||||| |||||||| || Sbjct 35 GGCGTCACACCGTATACGTC 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701367851904