Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 241 1e-58
seq7813 132 4e-26
>seq5580
Length=7482
Score = 241 bits (266), Expect = 1e-58
Identities = 512/756 (68%), Gaps = 19/756 (3%)
Strand=Plus/Minus
Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244
|||| | || ||| | | || || ||||| ||||||||||| || || || || |||||
Sbjct 6078 TGAAAAGCACTTCGTCAGCCACGTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAA 6019
Query 61245 TGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304
||| || || |||| || || || || || ||||| || | || ||||| ||||||||
Sbjct 6018 TGAAAACTTGGTGGAGCGATTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTA 5959
Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364
||||||||||||||||||||| || | || || || ||||| || | ||||| ||
Sbjct 5958 CGGCTTCCAGATTGCCATGGAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACAC 5899
Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCG 61422
|| ||| | | | || | | ||| ||||| || ||||| || | ||
Sbjct 5898 TTATATCCGATCTCCTGATGA--GAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCT 5841
Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC---CAGTACAACGGCTACA 61479
|| ||| ||| || ||||||||||| || |||||| | || ||| | | |
Sbjct 5840 TGTGTAAAGAAGAAGGCCGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAGGT--- 5784
Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539
|||| ||| ||| | | || ||||| | ||||||||| | |||||| ||| || |||
Sbjct 5783 TTTGCTGAGCGAGTCATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTT 5724
Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599
||| | || || ||| ||||||| | || | ||||||||||| || || ||| |||
Sbjct 5723 GCCTCCATTTTCTGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAG 5664
Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659
| || || || |||||||| ||||||| ||||||||| | | | ||||| ||
Sbjct 5663 CTCATTTCGCGTGACGAGGGTTTGCATTGCGATTTTGCTTGCCTTATGTACAAAC---AT 5607
Query 61660 CTGGTGAATCGTCCGTCGGAG--GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTA 61717
|||| || || ||| | | || || | || | || || || || ||
Sbjct 5606 TTGGTCAACAAACC--CGGCGTCGCTCGCGTTACGCAAATCATCCGCGATGCTGTGGTTA 5549
Query 61718 TCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGAC 61777
| || || ||||| |||| || ||||| || || | | | |||||||| ||||
Sbjct 5548 TAGAGCAAGAATTCTTGACCGATGCTTTACCGGTAGCCATGCTTGGCATGAACTGTGATT 5489
Query 61778 TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC 61837
| ||| ||||| ||||| || || || ||||| || |||||||| | ||| |
Sbjct 5488 TGATGAAACAGTACATTGAGTTCGTCGCAGACCGGCTCTTGGTCGAACT-TCAATGTCCC 5430
Query 61838 -GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896
||| || ||| | ||||||| || || || ||||| | ||||| | || ||||||
Sbjct 5429 AAGATTTACAATTCCGAAAACCCTTTCGACTTTATGGAAAACATTTCCTTAGAAGGCAAG 5370
Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932
|||||||| || ||||| || ||||| || |||
Sbjct 5369 ACGAATTTCTTTGAGAAGAAAGTGGGCGAATACCAA 5334
>seq7813
Length=5936
Score = 132 bits (146), Expect = 4e-26
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064
|| |||| ||||| | |||||||||||||| ||||| |||| || ||| |||||||||
Sbjct 1867 AGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATT 1926
Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124
|| || |||||||| ||| ||||| |||| || || |||||| || || ||
Sbjct 1927 TCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTA 1986
Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184
|| ||||||||||| | ||||| || ||||| || || |||||||| ||||| || ||
Sbjct 1987 CAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAGCC 2046
Query 66185 TGCCAAAG 66192
||||||
Sbjct 2047 GACCAAAG 2054
Score = 98.7 bits (108), Expect = 8e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472
||| || |||||| ||||| || ||||| |||| || || || ||| ||||||||
Sbjct 1160 CAAATGGTGATTGACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGA 1219
Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532
||| || ||||| || ||| |||| || | |||||| || ||||| ||||| |||||
Sbjct 1220 CGTATAGGCTTCAATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCAT 1279
Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGT 65564
|||||| | ||| || || || || | |||||
Sbjct 1280 GGGAGCTAACAATAACGAATTACGGACTCCGT 1311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397274230668560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |