Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5580 241 1e-58 seq7813 132 4e-26 >seq5580 Length=7482 Score = 241 bits (266), Expect = 1e-58 Identities = 512/756 (68%), Gaps = 19/756 (3%) Strand=Plus/Minus Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244 |||| | || ||| | | || || ||||| ||||||||||| || || || || ||||| Sbjct 6078 TGAAAAGCACTTCGTCAGCCACGTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAA 6019 Query 61245 TGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 ||| || || |||| || || || || || ||||| || | || ||||| |||||||| Sbjct 6018 TGAAAACTTGGTGGAGCGATTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTA 5959 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 ||||||||||||||||||||| || | || || || ||||| || | ||||| || Sbjct 5958 CGGCTTCCAGATTGCCATGGAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACAC 5899 Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCG 61422 || ||| | | | || | | ||| ||||| || ||||| || | || Sbjct 5898 TTATATCCGATCTCCTGATGA--GAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCT 5841 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC---CAGTACAACGGCTACA 61479 || ||| ||| || ||||||||||| || |||||| | || ||| | | | Sbjct 5840 TGTGTAAAGAAGAAGGCCGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAGGT--- 5784 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 |||| ||| ||| | | || ||||| | ||||||||| | |||||| ||| || ||| Sbjct 5783 TTTGCTGAGCGAGTCATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTT 5724 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| | || || ||| ||||||| | || | ||||||||||| || || ||| ||| Sbjct 5723 GCCTCCATTTTCTGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAG 5664 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659 | || || || |||||||| ||||||| ||||||||| | | | ||||| || Sbjct 5663 CTCATTTCGCGTGACGAGGGTTTGCATTGCGATTTTGCTTGCCTTATGTACAAAC---AT 5607 Query 61660 CTGGTGAATCGTCCGTCGGAG--GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTA 61717 |||| || || ||| | | || || | || | || || || || || Sbjct 5606 TTGGTCAACAAACC--CGGCGTCGCTCGCGTTACGCAAATCATCCGCGATGCTGTGGTTA 5549 Query 61718 TCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGAC 61777 | || || ||||| |||| || ||||| || || | | | |||||||| |||| Sbjct 5548 TAGAGCAAGAATTCTTGACCGATGCTTTACCGGTAGCCATGCTTGGCATGAACTGTGATT 5489 Query 61778 TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC 61837 | ||| ||||| ||||| || || || ||||| || |||||||| | ||| | Sbjct 5488 TGATGAAACAGTACATTGAGTTCGTCGCAGACCGGCTCTTGGTCGAACT-TCAATGTCCC 5430 Query 61838 -GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 ||| || ||| | ||||||| || || || ||||| | ||||| | || |||||| Sbjct 5429 AAGATTTACAATTCCGAAAACCCTTTCGACTTTATGGAAAACATTTCCTTAGAAGGCAAG 5370 Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 |||||||| || ||||| || ||||| || ||| Sbjct 5369 ACGAATTTCTTTGAGAAGAAAGTGGGCGAATACCAA 5334 >seq7813 Length=5936 Score = 132 bits (146), Expect = 4e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| ||||| | |||||||||||||| ||||| |||| || ||| ||||||||| Sbjct 1867 AGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATT 1926 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || || |||||||| ||| ||||| |||| || || |||||| || || || Sbjct 1927 TCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTA 1986 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||||||||| | ||||| || ||||| || || |||||||| ||||| || || Sbjct 1987 CAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAGCC 2046 Query 66185 TGCCAAAG 66192 |||||| Sbjct 2047 GACCAAAG 2054 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 ||| || |||||| ||||| || ||||| |||| || || || ||| |||||||| Sbjct 1160 CAAATGGTGATTGACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGA 1219 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || ||||| || ||| |||| || | |||||| || ||||| ||||| ||||| Sbjct 1220 CGTATAGGCTTCAATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCAT 1279 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGT 65564 |||||| | ||| || || || || | ||||| Sbjct 1280 GGGAGCTAACAATAACGAATTACGGACTCCGT 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397274230668560