Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq4723 583 3e-162 seq9686 304 5e-78 >seq4723 Length=43540 Score = 583 bits (646), Expect = 3e-162 Identities = 674/911 (74%), Gaps = 15/911 (2%) Strand=Plus/Minus Query 5482 TTCATTGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 5541 |||||| |||||| |||||| || || || |||||||| || ||||| ||||| || | Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227 Query 5542 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAACCA 5601 ||||||| ||||||||||||||||||||| |||||||| || || | || || |||| Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167 Query 5602 CGACATAATGCAGTCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 5661 ||||| || | ||||| || ||||| |||||||| || ||||||||| ||||||| | Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107 Query 5662 CTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 5721 |||| || | ||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047 Query 5722 CGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAA 5781 | || || || |||| ||| |||||||| || |||||||| || ||||| ||||| || | Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987 Query 5782 GGCCATTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGC 5841 ||||| | ||| |||||| | || || ||||||||||| || |||||| | ||||||| Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927 Query 5842 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCTGG 5901 | ||| |||||| || || | || | ||||||| |||||||| || ||||||| | Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867 Query 5902 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACAC 5961 |||| | ||| | ||||| ||||| ||||| | || |||||||||||||| | || | Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807 Query 5962 CGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCT 6021 ||||||| || || || ||||||||||||||||| |||||||||||||| | ||| |||| Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747 Query 6022 TTCCTGAGCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 6081 | || ||||| ||||| | || |||||| ||||| || || || || |||||||| | Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687 Query 6082 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATTCCGGTACGCT 6141 | | | ||||| || ||||| || || ||||| | | | ||||| || || || || Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627 Query 6142 GCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGCTCAGAGGCTTTCTGTTTCAGGAA 6201 ||||||||| || |||||||||| || ||| ||||| || ||||| Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582 Query 6202 TCCAAGAACTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 6261 || ||| |||| || |||||| || |||| || || | ||||| ||| || Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522 Query 6262 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 6321 || || | || |||||||| | | ||| ||||||| || |||| || || || || Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462 Query 6322 CAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 6381 || | || | || | || ||||| || |||| | | ||||||||| ||||| Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402 Query 6382 GCGTTCTGCAG 6392 || || |||| Sbjct 1401 ACGCTCGGCAG 1391 Score = 109 bits (120), Expect = 2e-19 Identities = 382/585 (65%), Gaps = 15/585 (3%) Strand=Plus/Minus Query 371 ATTGTTGTCTTTCATCCATGCTCCGTAAACATTGAATACCATTTGTGCGTTTGTGTGGCC 430 ||| || ||| ||||||| |||||||| | ||||||||| || || | | || || Sbjct 8143 ATTATTTTCTGACATCCATTTACCGTAAACCTGGAATACCATCTGCGCATCAGCATGCCC 8084 Query 431 CATCTGGCTTGCGATAAAACTAGGATTAGCTCCTGCGGCAAGTGACCAGCATGCATAAGT 490 ||| || || || || || || || || || | | ||||||||| || ||||| Sbjct 8083 CATTTGTGACGCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGT 8024 Query 491 ATGCCTGGATTGGTACGATTTTCTGTGTCTCAGACCTGCGCGTTTTAAGATACT-TGT-C 548 |||||||| || || || || |||||||| | ||||||||||||| | || ||| | Sbjct 8023 GTGCCTGGACTGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTA--CTGCTGTGTCC 7966 Query 549 CATGACTCCCTGATGGAGTCAACCTTGTAGTGAGGTCCGGACAACTGCTGCT-GTTTTGT 607 |||| | |||| || || || || ||||| ||| | ||| | | | | || Sbjct 7965 CATGTTTGTCTGACAGAATCGACAGTGAAGTGATCGCCGCA-TACTCCGGTTCGGGAGGT 7907 Query 608 TACCTGAGGACTAAAAACAAAAGTGCATTTATGCACAGCAGTTCTCCCATATTCCCTCAG 667 || |||| ||| ||||| || |||| ||| | || | |||||||||| ||| Sbjct 7906 AACAGAAGGAAGAAACACAAAGGTACATTCGTGCTTTTCCTTTTTACCATATTCCCGCAG 7847 Query 668 CTTCACCTCTACAGAA--TGTTGCTTTCCAAG-CATGGTCATTTCCGCCTGGCTTTTAAG 724 | || || ||| | || | ||||||||| | || | || ||| || ||||| || Sbjct 7846 GTGAACATC--CAGCACGTGCTCCTTTCCAAGTCGTGAT-ATCTCCAGTTGACTTTTGAG 7790 Query 725 AGCATCAATAGCTGGTTGAACCAGATGAATTGTCCTTCCGGTGCCTGCATCGGTTTTTGG 784 || || || || |||| || || || || ||| ||| || || | ||| ||||| Sbjct 7789 CGCCTCTATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGG 7730 Query 785 TGGAGTGAATTCGCCAAGTTTTGTATAATTTCTACGGATGGTTATAGTCCTTGCTTTAAG 844 || |||| | || | | ||||| | ||| | || |||| ||| || Sbjct 7729 AACCGTAAATT---TATCCTTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAG 7673 Query 845 GTCTATATCTTCCCATGCCAGCGATACCAACTCCCCGTGACGAATACCCGTGTATACAGC 904 ||| ||||| ||||| | | || ||||||||| | | || || || || |||| Sbjct 7672 GTCGATATCCTCCCAGCCTAAAGAGCACAACTCCCCAGGTCTAAGTCCTGTATAGACAGA 7613 Query 905 GAGAATCCACAGGTTTTTTGTTTGTTGATGACGGCAAGCCTCAAT 949 || |||||| ||||| | || || |||||| || || || Sbjct 7612 AAGCGCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGAT 7568 Score = 84.2 bits (92), Expect = 8e-12 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 4700 TTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATTAA 4759 || ||||| | |||||||| |||| ||| | ||| |||||||| ||||| | || | Sbjct 5132 TTACGCTGAAGCTCTTCAATCTCTGCTGCGGTATCGATGATGTCAGCCATGGT-CAATGC 5074 Query 4760 TCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAACAATAAAAAAGG 4812 |||| ||| ||| |||||| || |||| |||||| || | |||||||||||| Sbjct 5073 TCCCGGAACTGTCGGTTAAGTCGGTTGAAGGTGAAGGCCAGCAATAAAAAAGG 5021 >seq9686 Length=37809 Score = 304 bits (336), Expect = 5e-78 Identities = 359/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 18953 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 19012 ||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 19013 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 19072 |||||| | ||| |||| ||||| || |||||||| ||||| | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 19073 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 19132 || || |||||||||||||| ||||| |||||| | | |||||||| || || | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 19133 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 19192 |||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 19193 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 19252 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 19253 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 19312 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 19313 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 19371 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 19372 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 19431 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 19432 TAA 19434 ||| Sbjct 629 TAA 631 Score = 105 bits (116), Expect = 2e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 1893 CCACGGCAGTGGCACCACACGTCAAACATTCGTTTCACAACTTCACGGCAGTAGAAGCCG 1952 ||||| |||||||||||| | |||||||||||||| || ||||| ||||||||| ||||| Sbjct 29504 CCACGACAGTGGCACCACGCATCAAACATTCGTTTAACCACTTCCCGGCAGTAGTAGCCG 29563 Query 1953 TCGACATCACGGGTCAGGTCGTAGCGATTGCCGAATGTCTTGCGAACCCAGAACTCAAAA 2012 || ||| || |||||||||||||| || || | || || |||| | |||||| Sbjct 29564 TCACAATCCCGCGTCAGGTCGTAGCGGTTTCCATACCGCTGACGCGCCCACATTTCAAAA 29623 Query 2013 GCCGTATGCAT 2023 ||| | | ||| Sbjct 29624 GCCTTGTTCAT 29634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175419212544084