Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_011356.1
Length=54896
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 583 3e-162
seq9686 304 5e-78
>seq4723
Length=43540
Score = 583 bits (646), Expect = 3e-162
Identities = 674/911 (74%), Gaps = 15/911 (2%)
Strand=Plus/Minus
Query 5482 TTCATTGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 5541
|||||| |||||| |||||| || || || |||||||| || ||||| ||||| || |
Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227
Query 5542 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAACCA 5601
||||||| ||||||||||||||||||||| |||||||| || || | || || ||||
Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167
Query 5602 CGACATAATGCAGTCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 5661
||||| || | ||||| || ||||| |||||||| || ||||||||| ||||||| |
Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107
Query 5662 CTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 5721
|||| || | ||||||||||||||| |||||||||||||| || ||||| |||||||
Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047
Query 5722 CGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAA 5781
| || || || |||| ||| |||||||| || |||||||| || ||||| ||||| || |
Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987
Query 5782 GGCCATTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGC 5841
||||| | ||| |||||| | || || ||||||||||| || |||||| | |||||||
Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927
Query 5842 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCTGG 5901
| ||| |||||| || || | || | ||||||| |||||||| || ||||||| |
Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867
Query 5902 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACAC 5961
|||| | ||| | ||||| ||||| ||||| | || |||||||||||||| | || |
Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807
Query 5962 CGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCT 6021
||||||| || || || ||||||||||||||||| |||||||||||||| | ||| ||||
Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747
Query 6022 TTCCTGAGCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 6081
| || ||||| ||||| | || |||||| ||||| || || || || |||||||| |
Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687
Query 6082 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATTCCGGTACGCT 6141
| | | ||||| || ||||| || || ||||| | | | ||||| || || || ||
Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627
Query 6142 GCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGCTCAGAGGCTTTCTGTTTCAGGAA 6201
||||||||| || |||||||||| || ||| ||||| || |||||
Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582
Query 6202 TCCAAGAACTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 6261
|| ||| |||| || |||||| || |||| || || | ||||| ||| ||
Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522
Query 6262 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 6321
|| || | || |||||||| | | ||| ||||||| || |||| || || || ||
Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462
Query 6322 CAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 6381
|| | || | || | || ||||| || |||| | | ||||||||| |||||
Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402
Query 6382 GCGTTCTGCAG 6392
|| || ||||
Sbjct 1401 ACGCTCGGCAG 1391
Score = 109 bits (120), Expect = 2e-19
Identities = 382/585 (65%), Gaps = 15/585 (3%)
Strand=Plus/Minus
Query 371 ATTGTTGTCTTTCATCCATGCTCCGTAAACATTGAATACCATTTGTGCGTTTGTGTGGCC 430
||| || ||| ||||||| |||||||| | ||||||||| || || | | || ||
Sbjct 8143 ATTATTTTCTGACATCCATTTACCGTAAACCTGGAATACCATCTGCGCATCAGCATGCCC 8084
Query 431 CATCTGGCTTGCGATAAAACTAGGATTAGCTCCTGCGGCAAGTGACCAGCATGCATAAGT 490
||| || || || || || || || || || | | ||||||||| || |||||
Sbjct 8083 CATTTGTGACGCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGT 8024
Query 491 ATGCCTGGATTGGTACGATTTTCTGTGTCTCAGACCTGCGCGTTTTAAGATACT-TGT-C 548
|||||||| || || || || |||||||| | ||||||||||||| | || ||| |
Sbjct 8023 GTGCCTGGACTGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTA--CTGCTGTGTCC 7966
Query 549 CATGACTCCCTGATGGAGTCAACCTTGTAGTGAGGTCCGGACAACTGCTGCT-GTTTTGT 607
|||| | |||| || || || || ||||| ||| | ||| | | | | ||
Sbjct 7965 CATGTTTGTCTGACAGAATCGACAGTGAAGTGATCGCCGCA-TACTCCGGTTCGGGAGGT 7907
Query 608 TACCTGAGGACTAAAAACAAAAGTGCATTTATGCACAGCAGTTCTCCCATATTCCCTCAG 667
|| |||| ||| ||||| || |||| ||| | || | |||||||||| |||
Sbjct 7906 AACAGAAGGAAGAAACACAAAGGTACATTCGTGCTTTTCCTTTTTACCATATTCCCGCAG 7847
Query 668 CTTCACCTCTACAGAA--TGTTGCTTTCCAAG-CATGGTCATTTCCGCCTGGCTTTTAAG 724
| || || ||| | || | ||||||||| | || | || ||| || ||||| ||
Sbjct 7846 GTGAACATC--CAGCACGTGCTCCTTTCCAAGTCGTGAT-ATCTCCAGTTGACTTTTGAG 7790
Query 725 AGCATCAATAGCTGGTTGAACCAGATGAATTGTCCTTCCGGTGCCTGCATCGGTTTTTGG 784
|| || || || |||| || || || || ||| ||| || || | ||| |||||
Sbjct 7789 CGCCTCTATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGG 7730
Query 785 TGGAGTGAATTCGCCAAGTTTTGTATAATTTCTACGGATGGTTATAGTCCTTGCTTTAAG 844
|| |||| | || | | ||||| | ||| | || |||| ||| ||
Sbjct 7729 AACCGTAAATT---TATCCTTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAG 7673
Query 845 GTCTATATCTTCCCATGCCAGCGATACCAACTCCCCGTGACGAATACCCGTGTATACAGC 904
||| ||||| ||||| | | || ||||||||| | | || || || || ||||
Sbjct 7672 GTCGATATCCTCCCAGCCTAAAGAGCACAACTCCCCAGGTCTAAGTCCTGTATAGACAGA 7613
Query 905 GAGAATCCACAGGTTTTTTGTTTGTTGATGACGGCAAGCCTCAAT 949
|| |||||| ||||| | || || |||||| || || ||
Sbjct 7612 AAGCGCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGAT 7568
Score = 84.2 bits (92), Expect = 8e-12
Identities = 87/113 (77%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 4700 TTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATTAA 4759
|| ||||| | |||||||| |||| ||| | ||| |||||||| ||||| | || |
Sbjct 5132 TTACGCTGAAGCTCTTCAATCTCTGCTGCGGTATCGATGATGTCAGCCATGGT-CAATGC 5074
Query 4760 TCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAACAATAAAAAAGG 4812
|||| ||| ||| |||||| || |||| |||||| || | ||||||||||||
Sbjct 5073 TCCCGGAACTGTCGGTTAAGTCGGTTGAAGGTGAAGGCCAGCAATAAAAAAGG 5021
>seq9686
Length=37809
Score = 304 bits (336), Expect = 5e-78
Identities = 359/483 (74%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 18953 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 19012
||||| || |||| ||||| | || |||||||| || ||||| || ||||| |||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 19013 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 19072
|||||| | ||| |||| ||||| || |||||||| ||||| | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 19073 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 19132
|| || |||||||||||||| ||||| |||||| | | |||||||| || || | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 19133 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 19192
|||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| ||||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 19193 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 19252
|| ||||||||||| || || ||||| ||||| || | ||| |||||| | ||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 19253 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 19312
||||| ||||| ||||||||||||||||||||||||| | || | || |||||||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518
Query 19313 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 19371
|||| ||| |||||| |||| | ||| ||| ||||| | ||||
Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568
Query 19372 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 19431
|||||||| |||||||| | | ||||| || |||||||||| || | | ||| |||
Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628
Query 19432 TAA 19434
|||
Sbjct 629 TAA 631
Score = 105 bits (116), Expect = 2e-18
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 1893 CCACGGCAGTGGCACCACACGTCAAACATTCGTTTCACAACTTCACGGCAGTAGAAGCCG 1952
||||| |||||||||||| | |||||||||||||| || ||||| ||||||||| |||||
Sbjct 29504 CCACGACAGTGGCACCACGCATCAAACATTCGTTTAACCACTTCCCGGCAGTAGTAGCCG 29563
Query 1953 TCGACATCACGGGTCAGGTCGTAGCGATTGCCGAATGTCTTGCGAACCCAGAACTCAAAA 2012
|| ||| || |||||||||||||| || || | || || |||| | ||||||
Sbjct 29564 TCACAATCCCGCGTCAGGTCGTAGCGGTTTCCATACCGCTGACGCGCCCACATTTCAAAA 29623
Query 2013 GCCGTATGCAT 2023
||| | | |||
Sbjct 29624 GCCTTGTTCAT 29634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175419212544084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |