Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq289 313 4e-83 seq8838 280 3e-73 seq3940 161 2e-37 seq2962 129 1e-27 seq3745 105 1e-20 >seq289 Length=72072 Score = 313 bits (346), Expect = 4e-83 Identities = 212/238 (89%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 19837 GTAGGGTAAAACTAATCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 19896 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| Sbjct 19897 GGTGAACAATCCAACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGA 19956 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 | |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 19957 AAGATCAAAAAGCACCGTCGCTATGAACGTTTGGCCGCCACAAGCCAGTTATCCCTGTGG 20016 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 || |||||||| ||||| | || | ||||| | | || ||||||| || |||||| Sbjct 20017 TAGCTTTTCTGACACCTTTTGCTTAAAATTCCTAAAAACAAAAGGATAGAGGGGCCAC 20074 >seq8838 Length=27029 Score = 280 bits (310), Expect = 3e-73 Identities = 188/210 (90%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 8676 GTAAGGTAACATTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 8735 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||||||| ||| |||||||||||| | ||| ||||||||||||||||||| Sbjct 8736 AGTGAACAATCCAACACTTGGCGAATTCTGCTTGGCAATGCTAGGAAGAGCCGACATCGA 8795 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||| Sbjct 8796 AGGATCAAAAAGCGACGTTGCTGTGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGG 8855 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||| ||| ||||| | || | ||||| Sbjct 8856 TAACTTTCCTGACACCTTTTGCTTAAAATT 8885 >seq3940 Length=26581 Score = 161 bits (178), Expect = 2e-37 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| ||| | |||||||||||||||||| | |||||| ||||||||| ||| Sbjct 4309 CCTGTCTCACGACAGCCTAAACCCAGCTCACGTTTCTTATTAGCAAATGAACAATCTAAC 4368 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 | | ||||| |||| ||| | ||||||| || ||| |||||| |||| || | Sbjct 4369 ATTCGGTGTATTCTTTTTCGCAATGGTCAGAAGAGCTGATATCAAAGGATTAAAAGGCGA 4428 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 |||| |||||| ||| ||| ||||||||||||||||||||||||||||| |||| || Sbjct 4429 CGTCTCTATGATCGCATGGTCGCCACAAGCCAGTTATCCCTGTGGTAACTCTTCTAATAC 4488 Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 || | || ||||| | | ||| ||||||| Sbjct 4489 CTGTTGCTCAAAATTCCTAAAGACAAAAGGAT 4520 >seq2962 Length=16260 Score = 129 bits (142), Expect = 1e-27 Identities = 151/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||||||||| |||| ||||||| | |||||||| |||| ||||||| | |||| Sbjct 6134 CAGTAGGGTAAC-CTAA--TGTCTCACAAAAGTCTAAACGGAGCTTACGTTCCGTGTTAG 6078 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 | |||||||||||||| ||| | | | ||||||| | |||||| || |||||| Sbjct 6077 TTGGTGAACAATCCAATACTTTCTGGAGTCTGCTTGACAACGATAGGG---GCTGACATC 6021 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||| ||||||| || || ||| || |||||| || | || |||||| |||| Sbjct 6020 AAAGGATTAAAAAGCGACATCTCTAGGACTGCTTGGTCGCGTCGAGAAAGTTATTTCTGT 5961 Query 215 GGTAACTTTTCTGGCACCTCT 235 |||||||||||||||| || Sbjct 5960 AATAACTTTTCTGGCACCGCT 5940 >seq3745 Length=85661 Score = 105 bits (116), Expect = 1e-20 Identities = 132/193 (68%), Gaps = 40/193 (21%) Strand=Plus/Minus Query 54 TGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113 ||||||| ||| || ||||||||||| | |||||||||||||||||||||||| ||| Sbjct 43155 TGTCTCACGACAGTTTAAACCCAGCTGATGTTCCCTATTAGTGGGTGAACAATGTAACAG 43096 Query 114 TTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG 173 || ||||||||| || ||| Sbjct 43095 TTGGCGAATTCTGT----------------------------------------GCGACG 43076 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 43075 TCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCAGACACCT 43016 Query 234 CTAGCCTCAAATT 246 | || | | ||| Sbjct 43015 TTTGCGTAACATT 43003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854111520384