Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3940 163 9e-38 seq2962 122 3e-25 seq23028 118 3e-24 seq25233 95.1 4e-17 seq21833 91.5 5e-16 seq12414 86.0 2e-14 >seq3940 Length=26581 Score = 163 bits (180), Expect = 9e-38 Identities = 242/342 (71%), Gaps = 12/342 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| || |||||||||||| ||| ||||| |||||| ||||| Sbjct 4584 CTTTTGCTCTAGGCGAAATTTCTGTTCTCGCTGAACTGGCCTTATAGCACCTGTGTTATT 4643 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||| | |||||||| ||||||| || |||| ||||| |||| ||| Sbjct 4644 TTTTGACAGATTTATCGCCCCAGTGAAACTCCTCATTTGACTATGTCCTCAATATAAATC 4703 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 | | || || ||| || ||||| | ||||| | || |||| Sbjct 4704 GCACAAACAATTGTATTTTTTCCAAAACATGGT-----ATGACCATGT----TTATTTGA 4754 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 || |||||| |||| ||| | |||||| ||||||| | | || | | ||||||||| Sbjct 4755 TTCAGTAAAGAAACAATAGGAGTAGTGCTATTTCATTGATGACGGATC---TCCCACTTA 4811 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | ||||| || | ||| |||| || ||| ||| ||||| ||||| |||||||||||| Sbjct 4812 TGCTACATTTCCTATGTCTCTTCATAAGGTCAGACGAGAGTTAAGCTTAACAGGGTCTTC 4871 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 |||||||| | || ||||||||||||||||||||||||| Sbjct 4872 CTTCCCCGCCGTTTATTCCAAGCCCGTTCCCTTGGCTGTGGT 4913 >seq2962 Length=16260 Score = 122 bits (134), Expect = 3e-25 Identities = 129/167 (77%), Gaps = 5/167 (3%) Strand=Plus/Minus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC-C 325 |||||||| | |||| ||||||||| |||| || ||||| |||||| || | ||| | | Sbjct 5621 TTCACAAAATTGGACCAGAGTCAAGATCAATAGAGTCTTGTTTCCCTGCCG-TTCAGTTC 5563 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 || ||| || ||||||| ||| || |||||| | ||||||| | ||||||||||| Sbjct 5562 AATCCCCTTTTCTTGGCTATGGCTTTGCTAGACAAAAGATAGGAGCGCTGGGAATCTCGA 5503 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||| || | ||||||||||||| |||||||| ||| |||||| Sbjct 5502 TAATAAAT---TTTGCGTCACTAATTATATGACGAGACATCTGGCTA 5459 >seq23028 Length=39466 Score = 118 bits (130), Expect = 3e-24 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||| |||| ||||||||||||| |||| ||||||||||||||| |||| Sbjct 12020 TCATAGTTACTCTCGCCCTTTACCCGCGCTTCAAAGAATCTCTTCACTTTGACATCCAGA 11961 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||| ||| |||| || ||| Sbjct 11960 GCACTGGGCAGAAATCACATTGTGTCGTAATCAATTACTG 11921 >seq25233 Length=445 Score = 95.1 bits (104), Expect = 4e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 65 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCAAAGAATCTCTTCACTTTGACATT 6 Query 500 CAGAG 504 ||||| Sbjct 5 CAGAG 1 >seq21833 Length=320 Score = 91.5 bits (100), Expect = 5e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 ||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 66 ACACCTCCTATGTCTCTTCACAAAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 7 Query 311 CCCGC 315 ||||| Sbjct 6 CCCGC 2 >seq12414 Length=79439 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| || ||||||||||| ||| ||| ||| ||||||||||||| Sbjct 23822 CTTTTGCTCTATGCGATATTTCTGTTCTTGCTGAACTGCCCGTAGCACACCTGCGTTATT 23763 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAA 118 ||| ||| |||| | | ||||| |||||||||||| ||| || || |||| Sbjct 23762 TTTTGACAAATGTACAGTCCCAGTCAAACTCCCCACATGATTATATCCTCAA 23711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634647891072